Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1npua_PU0_1-24
CI=2.04


[25-78]:
1npua_PU0_25-78
CI=3.62


[79-116 ]:
1npua_PU0_79-116
CI=2.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1npua_PU1_1-24
CI=2.04


[25-58]:
1npua_PU1_25-58
CI=2.76


[59-78]:
1npua_PU1_59-78
CI=2.64


[79-116 ]:
1npua_PU1_79-116
CI=2.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1npua_PU2_1-24
CI=2.04


[25-41]:
1npua_PU2_25-41
CI=0.00


[42-58]:
1npua_PU2_42-58
CI=1.63


[59-78]:
1npua_PU2_59-78
CI=2.64


[79-116 ]:
1npua_PU2_79-116
CI=2.47


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1npua_PU_1-24
CI=2.04


[25-41]:
1npua_PU_25-41
CI=0.00


[42-58]:
1npua_PU_42-58
CI=1.63


[59-78]:
1npua_PU_59-78
CI=2.64


[79-98]:
1npua_PU_79-98
CI=0.00


[99-116 ]:
1npua_PU_99-116
CI=0.00