Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-28]:
1nqja_PU0_1-28
CI=1.40


[29-81]:
1nqja_PU0_29-81
CI=4.24


[82-96 ]:
1nqja_PU0_82-96
CI=0.00


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-28]:
1nqja_PU_1-28
CI=1.40


[29-51]:
1nqja_PU_29-51
CI=0.38


[52-81]:
1nqja_PU_52-81
CI=1.76


[82-96 ]:
1nqja_PU_82-96
CI=0.00