Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1nrva_PU0_1-50
CI=2.73


[51-92]:
1nrva_PU0_51-92
CI=1.81


[93-100 ]:
1nrva_PU0_93-100
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-50]:
1nrva_PU1_1-50
CI=2.73


[51-75]:
1nrva_PU1_51-75
CI=1.89


[76-92]:
1nrva_PU1_76-92
CI=0.32


[93-100 ]:
1nrva_PU1_93-100
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1nrva_PU_1-26
CI=0.22


[27-50]:
1nrva_PU_27-50
CI=2.92


[51-75]:
1nrva_PU_51-75
CI=1.89


[76-92]:
1nrva_PU_76-92
CI=0.32


[93-100 ]:
1nrva_PU_93-100
CI=0.00