Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU0_1-22
CI=0.00


[23-190]:
1nsca_PU0_23-190
CI=5.77


[191-390 ]:
1nsca_PU0_191-390
CI=5.60


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU1_1-22
CI=0.00


[23-99]:
1nsca_PU1_23-99
CI=4.37


[100-190]:
1nsca_PU1_100-190
CI=5.45


[191-390 ]:
1nsca_PU1_191-390
CI=5.60


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU2_1-22
CI=0.00


[23-99]:
1nsca_PU2_23-99
CI=4.37


[100-190]:
1nsca_PU2_100-190
CI=5.45


[191-273]:
1nsca_PU2_191-273
CI=5.07


[274-390 ]:
1nsca_PU2_274-390
CI=4.43


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU3_1-22
CI=0.00


[23-99]:
1nsca_PU3_23-99
CI=4.37


[100-190]:
1nsca_PU3_100-190
CI=5.45


[191-273]:
1nsca_PU3_191-273
CI=5.07


[274-331]:
1nsca_PU3_274-331
CI=3.91


[332-390 ]:
1nsca_PU3_332-390
CI=2.79


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU4_1-22
CI=0.00


[23-99]:
1nsca_PU4_23-99
CI=4.37


[100-190]:
1nsca_PU4_100-190
CI=5.45


[191-273]:
1nsca_PU4_191-273
CI=5.07


[274-331]:
1nsca_PU4_274-331
CI=3.91


[332-372]:
1nsca_PU4_332-372
CI=3.57


[373-390 ]:
1nsca_PU4_373-390
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU5_1-22
CI=0.00


[23-99]:
1nsca_PU5_23-99
CI=4.37


[100-190]:
1nsca_PU5_100-190
CI=5.45


[191-273]:
1nsca_PU5_191-273
CI=5.07


[274-290]:
1nsca_PU5_274-290
CI=2.31


[291-331]:
1nsca_PU5_291-331
CI=3.23


[332-372]:
1nsca_PU5_332-372
CI=3.57


[373-390 ]:
1nsca_PU5_373-390
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU6_1-22
CI=0.00


[23-99]:
1nsca_PU6_23-99
CI=4.37


[100-190]:
1nsca_PU6_100-190
CI=5.45


[191-241]:
1nsca_PU6_191-241
CI=4.43


[242-273]:
1nsca_PU6_242-273
CI=2.37


[274-290]:
1nsca_PU6_274-290
CI=2.31


[291-331]:
1nsca_PU6_291-331
CI=3.23


[332-372]:
1nsca_PU6_332-372
CI=3.57


[373-390 ]:
1nsca_PU6_373-390
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU7_1-22
CI=0.00


[23-39]:
1nsca_PU7_23-39
CI=1.19


[40-55]:
1nsca_PU7_40-55
CI=2.42


[56-99]:
1nsca_PU7_56-99
CI=2.22


[100-190]:
1nsca_PU7_100-190
CI=5.45


[191-241]:
1nsca_PU7_191-241
CI=4.43


[242-273]:
1nsca_PU7_242-273
CI=2.37


[274-290]:
1nsca_PU7_274-290
CI=2.31


[291-331]:
1nsca_PU7_291-331
CI=3.23


[332-372]:
1nsca_PU7_332-372
CI=3.57


[373-390 ]:
1nsca_PU7_373-390
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU8_1-22
CI=0.00


[23-39]:
1nsca_PU8_23-39
CI=1.19


[40-55]:
1nsca_PU8_40-55
CI=2.42


[56-77]:
1nsca_PU8_56-77
CI=0.51


[78-99]:
1nsca_PU8_78-99
CI=2.31


[100-190]:
1nsca_PU8_100-190
CI=5.45


[191-241]:
1nsca_PU8_191-241
CI=4.43


[242-273]:
1nsca_PU8_242-273
CI=2.37


[274-290]:
1nsca_PU8_274-290
CI=2.31


[291-331]:
1nsca_PU8_291-331
CI=3.23


[332-372]:
1nsca_PU8_332-372
CI=3.57


[373-390 ]:
1nsca_PU8_373-390
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU9_1-22
CI=0.00


[23-39]:
1nsca_PU9_23-39
CI=1.19


[40-55]:
1nsca_PU9_40-55
CI=2.42


[56-77]:
1nsca_PU9_56-77
CI=0.51


[78-99]:
1nsca_PU9_78-99
CI=2.31


[100-152]:
1nsca_PU9_100-152
CI=4.87


[153-190]:
1nsca_PU9_153-190
CI=3.18


[191-241]:
1nsca_PU9_191-241
CI=4.43


[242-273]:
1nsca_PU9_242-273
CI=2.37


[274-290]:
1nsca_PU9_274-290
CI=2.31


[291-331]:
1nsca_PU9_291-331
CI=3.23


[332-372]:
1nsca_PU9_332-372
CI=3.57


[373-390 ]:
1nsca_PU9_373-390
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU10_1-22
CI=0.00


[23-39]:
1nsca_PU10_23-39
CI=1.19


[40-55]:
1nsca_PU10_40-55
CI=2.42


[56-77]:
1nsca_PU10_56-77
CI=0.51


[78-99]:
1nsca_PU10_78-99
CI=2.31


[100-152]:
1nsca_PU10_100-152
CI=4.87


[153-190]:
1nsca_PU10_153-190
CI=3.18


[191-241]:
1nsca_PU10_191-241
CI=4.43


[242-273]:
1nsca_PU10_242-273
CI=2.37


[274-290]:
1nsca_PU10_274-290
CI=2.31


[291-331]:
1nsca_PU10_291-331
CI=3.23


[332-349]:
1nsca_PU10_332-349
CI=1.77


[350-372]:
1nsca_PU10_350-372
CI=2.47


[373-390 ]:
1nsca_PU10_373-390
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU11_1-22
CI=0.00


[23-39]:
1nsca_PU11_23-39
CI=1.19


[40-55]:
1nsca_PU11_40-55
CI=2.42


[56-77]:
1nsca_PU11_56-77
CI=0.51


[78-99]:
1nsca_PU11_78-99
CI=2.31


[100-117]:
1nsca_PU11_100-117
CI=2.29


[118-152]:
1nsca_PU11_118-152
CI=2.99


[153-190]:
1nsca_PU11_153-190
CI=3.18


[191-241]:
1nsca_PU11_191-241
CI=4.43


[242-273]:
1nsca_PU11_242-273
CI=2.37


[274-290]:
1nsca_PU11_274-290
CI=2.31


[291-331]:
1nsca_PU11_291-331
CI=3.23


[332-349]:
1nsca_PU11_332-349
CI=1.77


[350-372]:
1nsca_PU11_350-372
CI=2.47


[373-390 ]:
1nsca_PU11_373-390
CI=0.00


Level 12
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU12_1-22
CI=0.00


[23-39]:
1nsca_PU12_23-39
CI=1.19


[40-55]:
1nsca_PU12_40-55
CI=2.42


[56-77]:
1nsca_PU12_56-77
CI=0.51


[78-99]:
1nsca_PU12_78-99
CI=2.31


[100-117]:
1nsca_PU12_100-117
CI=2.29


[118-152]:
1nsca_PU12_118-152
CI=2.99


[153-171]:
1nsca_PU12_153-171
CI=0.70


[172-190]:
1nsca_PU12_172-190
CI=1.97


[191-241]:
1nsca_PU12_191-241
CI=4.43


[242-273]:
1nsca_PU12_242-273
CI=2.37


[274-290]:
1nsca_PU12_274-290
CI=2.31


[291-331]:
1nsca_PU12_291-331
CI=3.23


[332-349]:
1nsca_PU12_332-349
CI=1.77


[350-372]:
1nsca_PU12_350-372
CI=2.47


[373-390 ]:
1nsca_PU12_373-390
CI=0.00


Level 13
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU13_1-22
CI=0.00


[23-39]:
1nsca_PU13_23-39
CI=1.19


[40-55]:
1nsca_PU13_40-55
CI=2.42


[56-77]:
1nsca_PU13_56-77
CI=0.51


[78-99]:
1nsca_PU13_78-99
CI=2.31


[100-117]:
1nsca_PU13_100-117
CI=2.29


[118-152]:
1nsca_PU13_118-152
CI=2.99


[153-171]:
1nsca_PU13_153-171
CI=0.70


[172-190]:
1nsca_PU13_172-190
CI=1.97


[191-222]:
1nsca_PU13_191-222
CI=2.14


[223-241]:
1nsca_PU13_223-241
CI=2.57


[242-273]:
1nsca_PU13_242-273
CI=2.37


[274-290]:
1nsca_PU13_274-290
CI=2.31


[291-331]:
1nsca_PU13_291-331
CI=3.23


[332-349]:
1nsca_PU13_332-349
CI=1.77


[350-372]:
1nsca_PU13_350-372
CI=2.47


[373-390 ]:
1nsca_PU13_373-390
CI=0.00


Final level 14

PU
Molecule needs Java 1.4 Structure


[1-22]:
1nsca_PU_1-22
CI=0.00


[23-39]:
1nsca_PU_23-39
CI=1.19


[40-55]:
1nsca_PU_40-55
CI=2.42


[56-77]:
1nsca_PU_56-77
CI=0.51


[78-99]:
1nsca_PU_78-99
CI=2.31


[100-117]:
1nsca_PU_100-117
CI=2.29


[118-152]:
1nsca_PU_118-152
CI=2.99


[153-171]:
1nsca_PU_153-171
CI=0.70


[172-190]:
1nsca_PU_172-190
CI=1.97


[191-222]:
1nsca_PU_191-222
CI=2.14


[223-241]:
1nsca_PU_223-241
CI=2.57


[242-273]:
1nsca_PU_242-273
CI=2.37


[274-290]:
1nsca_PU_274-290
CI=2.31


[291-307]:
1nsca_PU_291-307
CI=1.44


[308-331]:
1nsca_PU_308-331
CI=0.08


[332-349]:
1nsca_PU_332-349
CI=1.77


[350-372]:
1nsca_PU_350-372
CI=2.47


[373-390 ]:
1nsca_PU_373-390
CI=0.00