Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ntea_PU0_1-17
CI=0.00


[18-43]:
1ntea_PU0_18-43
CI=3.34


[44-82 ]:
1ntea_PU0_44-82
CI=2.40


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ntea_PU_1-17
CI=0.00


[18-43]:
1ntea_PU_18-43
CI=3.34


[44-66]:
1ntea_PU_44-66
CI=0.97


[67-82 ]:
1ntea_PU_67-82
CI=0.11