Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ntva_PU0_1-18
CI=0.11


[19-133]:
1ntva_PU0_19-133
CI=4.61


[134-152 ]:
1ntva_PU0_134-152
CI=0.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ntva_PU1_1-18
CI=0.11


[19-43]:
1ntva_PU1_19-43
CI=0.59


[44-59]:
1ntva_PU1_44-59
CI=0.56


[60-133]:
1ntva_PU1_60-133
CI=3.76


[134-152 ]:
1ntva_PU1_134-152
CI=0.38


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1ntva_PU2_1-18
CI=0.11


[19-43]:
1ntva_PU2_19-43
CI=0.59


[44-59]:
1ntva_PU2_44-59
CI=0.56


[60-86]:
1ntva_PU2_60-86
CI=3.29


[87-133]:
1ntva_PU2_87-133
CI=3.27


[134-152 ]:
1ntva_PU2_134-152
CI=0.38


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1ntva_PU_1-18
CI=0.11


[19-43]:
1ntva_PU_19-43
CI=0.59


[44-59]:
1ntva_PU_44-59
CI=0.56


[60-86]:
1ntva_PU_60-86
CI=3.29


[87-113]:
1ntva_PU_87-113
CI=2.18


[114-133]:
1ntva_PU_114-133
CI=0.00


[134-152 ]:
1ntva_PU_134-152
CI=0.38