Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-53]:
1nu0a_PU0_1-53
CI=3.31


[54-100]:
1nu0a_PU0_54-100
CI=2.78


[101-127 ]:
1nu0a_PU0_101-127
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1nu0a_PU1_1-36
CI=3.94


[37-53]:
1nu0a_PU1_37-53
CI=0.10


[54-100]:
1nu0a_PU1_54-100
CI=2.78


[101-127 ]:
1nu0a_PU1_101-127
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-36]:
1nu0a_PU2_1-36
CI=3.94


[37-53]:
1nu0a_PU2_37-53
CI=0.10


[54-77]:
1nu0a_PU2_54-77
CI=1.09


[78-100]:
1nu0a_PU2_78-100
CI=0.57


[101-127 ]:
1nu0a_PU2_101-127
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1nu0a_PU_1-19
CI=1.97


[20-36]:
1nu0a_PU_20-36
CI=0.00


[37-53]:
1nu0a_PU_37-53
CI=0.10


[54-77]:
1nu0a_PU_54-77
CI=1.09


[78-100]:
1nu0a_PU_78-100
CI=0.57


[101-127 ]:
1nu0a_PU_101-127
CI=0.00