Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nula_PU0_1-16
CI=0.00


[17-122]:
1nula_PU0_17-122
CI=4.46


[123-142 ]:
1nula_PU0_123-142
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nula_PU1_1-16
CI=0.00


[17-67]:
1nula_PU1_17-67
CI=2.55


[68-122]:
1nula_PU1_68-122
CI=3.86


[123-142 ]:
1nula_PU1_123-142
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nula_PU2_1-16
CI=0.00


[17-51]:
1nula_PU2_17-51
CI=1.39


[52-67]:
1nula_PU2_52-67
CI=1.63


[68-122]:
1nula_PU2_68-122
CI=3.86


[123-142 ]:
1nula_PU2_123-142
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nula_PU3_1-16
CI=0.00


[17-51]:
1nula_PU3_17-51
CI=1.39


[52-67]:
1nula_PU3_52-67
CI=1.63


[68-97]:
1nula_PU3_68-97
CI=1.33


[98-122]:
1nula_PU3_98-122
CI=2.88


[123-142 ]:
1nula_PU3_123-142
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1nula_PU_1-16
CI=0.00


[17-33]:
1nula_PU_17-33
CI=0.10


[34-51]:
1nula_PU_34-51
CI=0.10


[52-67]:
1nula_PU_52-67
CI=1.63


[68-97]:
1nula_PU_68-97
CI=1.33


[98-122]:
1nula_PU_98-122
CI=2.88


[123-142 ]:
1nula_PU_123-142
CI=0.00