Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-193]:
1nuya_PU0_1-193
CI=3.94


[194-328 ]:
1nuya_PU0_194-328
CI=3.93


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU1_1-19
CI=0.00


[20-162]:
1nuya_PU1_20-162
CI=3.74


[163-193]:
1nuya_PU1_163-193
CI=3.26


[194-328 ]:
1nuya_PU1_194-328
CI=3.93


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU2_1-19
CI=0.00


[20-162]:
1nuya_PU2_20-162
CI=3.74


[163-193]:
1nuya_PU2_163-193
CI=3.26


[194-218]:
1nuya_PU2_194-218
CI=0.07


[219-234]:
1nuya_PU2_219-234
CI=0.70


[235-328 ]:
1nuya_PU2_235-328
CI=3.29


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU3_1-19
CI=0.00


[20-38]:
1nuya_PU3_20-38
CI=0.00


[39-69]:
1nuya_PU3_39-69
CI=1.60


[70-162]:
1nuya_PU3_70-162
CI=3.88


[163-193]:
1nuya_PU3_163-193
CI=3.26


[194-218]:
1nuya_PU3_194-218
CI=0.07


[219-234]:
1nuya_PU3_219-234
CI=0.70


[235-328 ]:
1nuya_PU3_235-328
CI=3.29


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU4_1-19
CI=0.00


[20-38]:
1nuya_PU4_20-38
CI=0.00


[39-69]:
1nuya_PU4_39-69
CI=1.60


[70-162]:
1nuya_PU4_70-162
CI=3.88


[163-193]:
1nuya_PU4_163-193
CI=3.26


[194-218]:
1nuya_PU4_194-218
CI=0.07


[219-234]:
1nuya_PU4_219-234
CI=0.70


[235-252]:
1nuya_PU4_235-252
CI=0.21


[253-328 ]:
1nuya_PU4_253-328
CI=3.63


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU5_1-19
CI=0.00


[20-38]:
1nuya_PU5_20-38
CI=0.00


[39-69]:
1nuya_PU5_39-69
CI=1.60


[70-106]:
1nuya_PU5_70-106
CI=2.31


[107-162]:
1nuya_PU5_107-162
CI=3.27


[163-193]:
1nuya_PU5_163-193
CI=3.26


[194-218]:
1nuya_PU5_194-218
CI=0.07


[219-234]:
1nuya_PU5_219-234
CI=0.70


[235-252]:
1nuya_PU5_235-252
CI=0.21


[253-328 ]:
1nuya_PU5_253-328
CI=3.63


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU6_1-19
CI=0.00


[20-38]:
1nuya_PU6_20-38
CI=0.00


[39-69]:
1nuya_PU6_39-69
CI=1.60


[70-106]:
1nuya_PU6_70-106
CI=2.31


[107-162]:
1nuya_PU6_107-162
CI=3.27


[163-193]:
1nuya_PU6_163-193
CI=3.26


[194-218]:
1nuya_PU6_194-218
CI=0.07


[219-234]:
1nuya_PU6_219-234
CI=0.70


[235-252]:
1nuya_PU6_235-252
CI=0.21


[253-312]:
1nuya_PU6_253-312
CI=3.78


[313-328 ]:
1nuya_PU6_313-328
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU7_1-19
CI=0.00


[20-38]:
1nuya_PU7_20-38
CI=0.00


[39-69]:
1nuya_PU7_39-69
CI=1.60


[70-106]:
1nuya_PU7_70-106
CI=2.31


[107-162]:
1nuya_PU7_107-162
CI=3.27


[163-193]:
1nuya_PU7_163-193
CI=3.26


[194-218]:
1nuya_PU7_194-218
CI=0.07


[219-234]:
1nuya_PU7_219-234
CI=0.70


[235-252]:
1nuya_PU7_235-252
CI=0.21


[253-270]:
1nuya_PU7_253-270
CI=0.92


[271-288]:
1nuya_PU7_271-288
CI=0.70


[289-312]:
1nuya_PU7_289-312
CI=1.26


[313-328 ]:
1nuya_PU7_313-328
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU8_1-19
CI=0.00


[20-38]:
1nuya_PU8_20-38
CI=0.00


[39-69]:
1nuya_PU8_39-69
CI=1.60


[70-106]:
1nuya_PU8_70-106
CI=2.31


[107-132]:
1nuya_PU8_107-132
CI=2.56


[133-162]:
1nuya_PU8_133-162
CI=0.38


[163-193]:
1nuya_PU8_163-193
CI=3.26


[194-218]:
1nuya_PU8_194-218
CI=0.07


[219-234]:
1nuya_PU8_219-234
CI=0.70


[235-252]:
1nuya_PU8_235-252
CI=0.21


[253-270]:
1nuya_PU8_253-270
CI=0.92


[271-288]:
1nuya_PU8_271-288
CI=0.70


[289-312]:
1nuya_PU8_289-312
CI=1.26


[313-328 ]:
1nuya_PU8_313-328
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1nuya_PU_1-19
CI=0.00


[20-38]:
1nuya_PU_20-38
CI=0.00


[39-69]:
1nuya_PU_39-69
CI=1.60


[70-88]:
1nuya_PU_70-88
CI=0.28


[89-106]:
1nuya_PU_89-106
CI=0.10


[107-132]:
1nuya_PU_107-132
CI=2.56


[133-162]:
1nuya_PU_133-162
CI=0.38


[163-193]:
1nuya_PU_163-193
CI=3.26


[194-218]:
1nuya_PU_194-218
CI=0.07


[219-234]:
1nuya_PU_219-234
CI=0.70


[235-252]:
1nuya_PU_235-252
CI=0.21


[253-270]:
1nuya_PU_253-270
CI=0.92


[271-288]:
1nuya_PU_271-288
CI=0.70


[289-312]:
1nuya_PU_289-312
CI=1.26


[313-328 ]:
1nuya_PU_313-328
CI=0.00