Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-292]:
1nvma_PU0_1-292
CI=5.49


[293-340 ]:
1nvma_PU0_293-340
CI=1.57


Level 1
PU
Molecule needs Java 1.4 Structure


[1-106]:
1nvma_PU1_1-106
CI=3.94


[107-219]:
1nvma_PU1_107-219
CI=4.53


[220-292]:
1nvma_PU1_220-292
CI=2.52


[293-340 ]:
1nvma_PU1_293-340
CI=1.57


Level 2
PU
Molecule needs Java 1.4 Structure


[1-106]:
1nvma_PU2_1-106
CI=3.94


[107-219]:
1nvma_PU2_107-219
CI=4.53


[220-237]:
1nvma_PU2_220-237
CI=2.25


[238-266]:
1nvma_PU2_238-266
CI=1.28


[267-292]:
1nvma_PU2_267-292
CI=0.35


[293-340 ]:
1nvma_PU2_293-340
CI=1.57


Level 3
PU
Molecule needs Java 1.4 Structure


[1-106]:
1nvma_PU3_1-106
CI=3.94


[107-168]:
1nvma_PU3_107-168
CI=4.15


[169-219]:
1nvma_PU3_169-219
CI=2.32


[220-237]:
1nvma_PU3_220-237
CI=2.25


[238-266]:
1nvma_PU3_238-266
CI=1.28


[267-292]:
1nvma_PU3_267-292
CI=0.35


[293-340 ]:
1nvma_PU3_293-340
CI=1.57


Level 4
PU
Molecule needs Java 1.4 Structure


[1-87]:
1nvma_PU4_1-87
CI=3.86


[88-106]:
1nvma_PU4_88-106
CI=0.19


[107-168]:
1nvma_PU4_107-168
CI=4.15


[169-219]:
1nvma_PU4_169-219
CI=2.32


[220-237]:
1nvma_PU4_220-237
CI=2.25


[238-266]:
1nvma_PU4_238-266
CI=1.28


[267-292]:
1nvma_PU4_267-292
CI=0.35


[293-340 ]:
1nvma_PU4_293-340
CI=1.57


Level 5
PU
Molecule needs Java 1.4 Structure


[1-87]:
1nvma_PU5_1-87
CI=3.86


[88-106]:
1nvma_PU5_88-106
CI=0.19


[107-168]:
1nvma_PU5_107-168
CI=4.15


[169-219]:
1nvma_PU5_169-219
CI=2.32


[220-237]:
1nvma_PU5_220-237
CI=2.25


[238-266]:
1nvma_PU5_238-266
CI=1.28


[267-292]:
1nvma_PU5_267-292
CI=0.35


[293-313]:
1nvma_PU5_293-313
CI=1.15


[314-340 ]:
1nvma_PU5_314-340
CI=0.48


Level 6
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nvma_PU6_1-26
CI=0.21


[27-43]:
1nvma_PU6_27-43
CI=0.00


[44-87]:
1nvma_PU6_44-87
CI=2.56


[88-106]:
1nvma_PU6_88-106
CI=0.19


[107-168]:
1nvma_PU6_107-168
CI=4.15


[169-219]:
1nvma_PU6_169-219
CI=2.32


[220-237]:
1nvma_PU6_220-237
CI=2.25


[238-266]:
1nvma_PU6_238-266
CI=1.28


[267-292]:
1nvma_PU6_267-292
CI=0.35


[293-313]:
1nvma_PU6_293-313
CI=1.15


[314-340 ]:
1nvma_PU6_314-340
CI=0.48


Level 7
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nvma_PU7_1-26
CI=0.21


[27-43]:
1nvma_PU7_27-43
CI=0.00


[44-64]:
1nvma_PU7_44-64
CI=1.06


[65-87]:
1nvma_PU7_65-87
CI=0.08


[88-106]:
1nvma_PU7_88-106
CI=0.19


[107-168]:
1nvma_PU7_107-168
CI=4.15


[169-219]:
1nvma_PU7_169-219
CI=2.32


[220-237]:
1nvma_PU7_220-237
CI=2.25


[238-266]:
1nvma_PU7_238-266
CI=1.28


[267-292]:
1nvma_PU7_267-292
CI=0.35


[293-313]:
1nvma_PU7_293-313
CI=1.15


[314-340 ]:
1nvma_PU7_314-340
CI=0.48


Level 8
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nvma_PU8_1-26
CI=0.21


[27-43]:
1nvma_PU8_27-43
CI=0.00


[44-64]:
1nvma_PU8_44-64
CI=1.06


[65-87]:
1nvma_PU8_65-87
CI=0.08


[88-106]:
1nvma_PU8_88-106
CI=0.19


[107-139]:
1nvma_PU8_107-139
CI=2.81


[140-168]:
1nvma_PU8_140-168
CI=0.97


[169-219]:
1nvma_PU8_169-219
CI=2.32


[220-237]:
1nvma_PU8_220-237
CI=2.25


[238-266]:
1nvma_PU8_238-266
CI=1.28


[267-292]:
1nvma_PU8_267-292
CI=0.35


[293-313]:
1nvma_PU8_293-313
CI=1.15


[314-340 ]:
1nvma_PU8_314-340
CI=0.48


Level 9
PU
Molecule needs Java 1.4 Structure


[1-26]:
1nvma_PU9_1-26
CI=0.21


[27-43]:
1nvma_PU9_27-43
CI=0.00


[44-64]:
1nvma_PU9_44-64
CI=1.06


[65-87]:
1nvma_PU9_65-87
CI=0.08


[88-106]:
1nvma_PU9_88-106
CI=0.19


[107-139]:
1nvma_PU9_107-139
CI=2.81


[140-168]:
1nvma_PU9_140-168
CI=0.97


[169-193]:
1nvma_PU9_169-193
CI=0.00


[194-219]:
1nvma_PU9_194-219
CI=1.15


[220-237]:
1nvma_PU9_220-237
CI=2.25


[238-266]:
1nvma_PU9_238-266
CI=1.28


[267-292]:
1nvma_PU9_267-292
CI=0.35


[293-313]:
1nvma_PU9_293-313
CI=1.15


[314-340 ]:
1nvma_PU9_314-340
CI=0.48


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-26]:
1nvma_PU_1-26
CI=0.21


[27-43]:
1nvma_PU_27-43
CI=0.00


[44-64]:
1nvma_PU_44-64
CI=1.06


[65-87]:
1nvma_PU_65-87
CI=0.08


[88-106]:
1nvma_PU_88-106
CI=0.19


[107-123]:
1nvma_PU_107-123
CI=0.54


[124-139]:
1nvma_PU_124-139
CI=0.57


[140-168]:
1nvma_PU_140-168
CI=0.97


[169-193]:
1nvma_PU_169-193
CI=0.00


[194-219]:
1nvma_PU_194-219
CI=1.15


[220-237]:
1nvma_PU_220-237
CI=2.25


[238-266]:
1nvma_PU_238-266
CI=1.28


[267-292]:
1nvma_PU_267-292
CI=0.35


[293-313]:
1nvma_PU_293-313
CI=1.15


[314-340 ]:
1nvma_PU_314-340
CI=0.48