Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-57]:
1nwpa_PU0_1-57
CI=2.73


[58-78]:
1nwpa_PU0_58-78
CI=2.22


[79-128 ]:
1nwpa_PU0_79-128
CI=1.64


Level 1
PU
Molecule needs Java 1.4 Structure


[1-57]:
1nwpa_PU1_1-57
CI=2.73


[58-78]:
1nwpa_PU1_58-78
CI=2.22


[79-106]:
1nwpa_PU1_79-106
CI=1.13


[107-128 ]:
1nwpa_PU1_107-128
CI=2.04


Level 2
PU
Molecule needs Java 1.4 Structure


[1-37]:
1nwpa_PU2_1-37
CI=3.25


[38-57]:
1nwpa_PU2_38-57
CI=0.26


[58-78]:
1nwpa_PU2_58-78
CI=2.22


[79-106]:
1nwpa_PU2_79-106
CI=1.13


[107-128 ]:
1nwpa_PU2_107-128
CI=2.04


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1nwpa_PU_1-21
CI=1.24


[22-37]:
1nwpa_PU_22-37
CI=0.23


[38-57]:
1nwpa_PU_38-57
CI=0.26


[58-78]:
1nwpa_PU_58-78
CI=2.22


[79-106]:
1nwpa_PU_79-106
CI=1.13


[107-128 ]:
1nwpa_PU_107-128
CI=2.04