Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1nwza_PU0_1-27
CI=1.17


[28-125 ]:
1nwza_PU0_28-125
CI=4.59


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1nwza_PU1_1-27
CI=1.17


[28-66]:
1nwza_PU1_28-66
CI=3.33


[67-125 ]:
1nwza_PU1_67-125
CI=3.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1nwza_PU2_1-27
CI=1.17


[28-66]:
1nwza_PU2_28-66
CI=3.33


[67-87]:
1nwza_PU2_67-87
CI=0.34


[88-125 ]:
1nwza_PU2_88-125
CI=3.80


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1nwza_PU_1-27
CI=1.17


[28-50]:
1nwza_PU_28-50
CI=2.62


[51-66]:
1nwza_PU_51-66
CI=0.34


[67-87]:
1nwza_PU_67-87
CI=0.34


[88-125 ]:
1nwza_PU_88-125
CI=3.80