Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1nxb0_PU0_1-22
CI=2.14


[23-62 ]:
1nxb0_PU0_23-62
CI=4.26


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-22]:
1nxb0_PU_1-22
CI=2.14


[23-40]:
1nxb0_PU_23-40
CI=2.29


[41-62 ]:
1nxb0_PU_41-62
CI=1.34