Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-254]:
1nxua_PU0_1-254
CI=4.69


[255-286]:
1nxua_PU0_255-286
CI=0.53


[287-317 ]:
1nxua_PU0_287-317
CI=0.06


Level 1
PU
Molecule needs Java 1.4 Structure


[1-57]:
1nxua_PU1_1-57
CI=1.30


[58-254]:
1nxua_PU1_58-254
CI=5.33


[255-286]:
1nxua_PU1_255-286
CI=0.53


[287-317 ]:
1nxua_PU1_287-317
CI=0.06


Level 2
PU
Molecule needs Java 1.4 Structure


[1-57]:
1nxua_PU2_1-57
CI=1.30


[58-166]:
1nxua_PU2_58-166
CI=4.52


[167-214]:
1nxua_PU2_167-214
CI=2.51


[215-254]:
1nxua_PU2_215-254
CI=1.33


[255-286]:
1nxua_PU2_255-286
CI=0.53


[287-317 ]:
1nxua_PU2_287-317
CI=0.06


Level 3
PU
Molecule needs Java 1.4 Structure


[1-57]:
1nxua_PU3_1-57
CI=1.30


[58-113]:
1nxua_PU3_58-113
CI=4.26


[114-166]:
1nxua_PU3_114-166
CI=4.40


[167-214]:
1nxua_PU3_167-214
CI=2.51


[215-254]:
1nxua_PU3_215-254
CI=1.33


[255-286]:
1nxua_PU3_255-286
CI=0.53


[287-317 ]:
1nxua_PU3_287-317
CI=0.06


Level 4
PU
Molecule needs Java 1.4 Structure


[1-30]:
1nxua_PU4_1-30
CI=0.88


[31-57]:
1nxua_PU4_31-57
CI=0.77


[58-113]:
1nxua_PU4_58-113
CI=4.26


[114-166]:
1nxua_PU4_114-166
CI=4.40


[167-214]:
1nxua_PU4_167-214
CI=2.51


[215-254]:
1nxua_PU4_215-254
CI=1.33


[255-286]:
1nxua_PU4_255-286
CI=0.53


[287-317 ]:
1nxua_PU4_287-317
CI=0.06


Level 5
PU
Molecule needs Java 1.4 Structure


[1-30]:
1nxua_PU5_1-30
CI=0.88


[31-57]:
1nxua_PU5_31-57
CI=0.77


[58-113]:
1nxua_PU5_58-113
CI=4.26


[114-166]:
1nxua_PU5_114-166
CI=4.40


[167-214]:
1nxua_PU5_167-214
CI=2.51


[215-231]:
1nxua_PU5_215-231
CI=0.44


[232-254]:
1nxua_PU5_232-254
CI=0.57


[255-286]:
1nxua_PU5_255-286
CI=0.53


[287-317 ]:
1nxua_PU5_287-317
CI=0.06


Level 6
PU
Molecule needs Java 1.4 Structure


[1-30]:
1nxua_PU6_1-30
CI=0.88


[31-57]:
1nxua_PU6_31-57
CI=0.77


[58-113]:
1nxua_PU6_58-113
CI=4.26


[114-166]:
1nxua_PU6_114-166
CI=4.40


[167-185]:
1nxua_PU6_167-185
CI=0.19


[186-214]:
1nxua_PU6_186-214
CI=2.03


[215-231]:
1nxua_PU6_215-231
CI=0.44


[232-254]:
1nxua_PU6_232-254
CI=0.57


[255-286]:
1nxua_PU6_255-286
CI=0.53


[287-317 ]:
1nxua_PU6_287-317
CI=0.06


Level 7
PU
Molecule needs Java 1.4 Structure


[1-30]:
1nxua_PU7_1-30
CI=0.88


[31-57]:
1nxua_PU7_31-57
CI=0.77


[58-83]:
1nxua_PU7_58-83
CI=3.06


[84-113]:
1nxua_PU7_84-113
CI=1.63


[114-166]:
1nxua_PU7_114-166
CI=4.40


[167-185]:
1nxua_PU7_167-185
CI=0.19


[186-214]:
1nxua_PU7_186-214
CI=2.03


[215-231]:
1nxua_PU7_215-231
CI=0.44


[232-254]:
1nxua_PU7_232-254
CI=0.57


[255-286]:
1nxua_PU7_255-286
CI=0.53


[287-317 ]:
1nxua_PU7_287-317
CI=0.06


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-30]:
1nxua_PU_1-30
CI=0.88


[31-57]:
1nxua_PU_31-57
CI=0.77


[58-83]:
1nxua_PU_58-83
CI=3.06


[84-113]:
1nxua_PU_84-113
CI=1.63


[114-135]:
1nxua_PU_114-135
CI=1.17


[136-166]:
1nxua_PU_136-166
CI=2.22


[167-185]:
1nxua_PU_167-185
CI=0.19


[186-214]:
1nxua_PU_186-214
CI=2.03


[215-231]:
1nxua_PU_215-231
CI=0.44


[232-254]:
1nxua_PU_232-254
CI=0.57


[255-286]:
1nxua_PU_255-286
CI=0.53


[287-317 ]:
1nxua_PU_287-317
CI=0.06