Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-101]:
1nyta_PU0_1-101
CI=4.04


[102-240]:
1nyta_PU0_102-240
CI=4.42


[241-271 ]:
1nyta_PU0_241-271
CI=0.86


Level 1
PU
Molecule needs Java 1.4 Structure


[1-63]:
1nyta_PU1_1-63
CI=3.02


[64-101]:
1nyta_PU1_64-101
CI=4.31


[102-240]:
1nyta_PU1_102-240
CI=4.42


[241-271 ]:
1nyta_PU1_241-271
CI=0.86


Level 2
PU
Molecule needs Java 1.4 Structure


[1-63]:
1nyta_PU2_1-63
CI=3.02


[64-101]:
1nyta_PU2_64-101
CI=4.31


[102-117]:
1nyta_PU2_102-117
CI=0.34


[118-181]:
1nyta_PU2_118-181
CI=3.38


[182-240]:
1nyta_PU2_182-240
CI=3.35


[241-271 ]:
1nyta_PU2_241-271
CI=0.86


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nyta_PU3_1-16
CI=0.12


[17-36]:
1nyta_PU3_17-36
CI=1.49


[37-63]:
1nyta_PU3_37-63
CI=0.34


[64-101]:
1nyta_PU3_64-101
CI=4.31


[102-117]:
1nyta_PU3_102-117
CI=0.34


[118-181]:
1nyta_PU3_118-181
CI=3.38


[182-240]:
1nyta_PU3_182-240
CI=3.35


[241-271 ]:
1nyta_PU3_241-271
CI=0.86


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nyta_PU4_1-16
CI=0.12


[17-36]:
1nyta_PU4_17-36
CI=1.49


[37-63]:
1nyta_PU4_37-63
CI=0.34


[64-101]:
1nyta_PU4_64-101
CI=4.31


[102-117]:
1nyta_PU4_102-117
CI=0.34


[118-147]:
1nyta_PU4_118-147
CI=2.03


[148-181]:
1nyta_PU4_148-181
CI=1.63


[182-240]:
1nyta_PU4_182-240
CI=3.35


[241-271 ]:
1nyta_PU4_241-271
CI=0.86


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nyta_PU5_1-16
CI=0.12


[17-36]:
1nyta_PU5_17-36
CI=1.49


[37-63]:
1nyta_PU5_37-63
CI=0.34


[64-101]:
1nyta_PU5_64-101
CI=4.31


[102-117]:
1nyta_PU5_102-117
CI=0.34


[118-147]:
1nyta_PU5_118-147
CI=2.03


[148-181]:
1nyta_PU5_148-181
CI=1.63


[182-199]:
1nyta_PU5_182-199
CI=0.41


[200-240]:
1nyta_PU5_200-240
CI=2.88


[241-271 ]:
1nyta_PU5_241-271
CI=0.86


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nyta_PU6_1-16
CI=0.12


[17-36]:
1nyta_PU6_17-36
CI=1.49


[37-63]:
1nyta_PU6_37-63
CI=0.34


[64-101]:
1nyta_PU6_64-101
CI=4.31


[102-117]:
1nyta_PU6_102-117
CI=0.34


[118-147]:
1nyta_PU6_118-147
CI=2.03


[148-165]:
1nyta_PU6_148-165
CI=0.21


[166-181]:
1nyta_PU6_166-181
CI=0.00


[182-199]:
1nyta_PU6_182-199
CI=0.41


[200-240]:
1nyta_PU6_200-240
CI=2.88


[241-271 ]:
1nyta_PU6_241-271
CI=0.86


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nyta_PU7_1-16
CI=0.12


[17-36]:
1nyta_PU7_17-36
CI=1.49


[37-63]:
1nyta_PU7_37-63
CI=0.34


[64-85]:
1nyta_PU7_64-85
CI=1.70


[86-101]:
1nyta_PU7_86-101
CI=2.22


[102-117]:
1nyta_PU7_102-117
CI=0.34


[118-147]:
1nyta_PU7_118-147
CI=2.03


[148-165]:
1nyta_PU7_148-165
CI=0.21


[166-181]:
1nyta_PU7_166-181
CI=0.00


[182-199]:
1nyta_PU7_182-199
CI=0.41


[200-240]:
1nyta_PU7_200-240
CI=2.88


[241-271 ]:
1nyta_PU7_241-271
CI=0.86


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1nyta_PU_1-16
CI=0.12


[17-36]:
1nyta_PU_17-36
CI=1.49


[37-63]:
1nyta_PU_37-63
CI=0.34


[64-85]:
1nyta_PU_64-85
CI=1.70


[86-101]:
1nyta_PU_86-101
CI=2.22


[102-117]:
1nyta_PU_102-117
CI=0.34


[118-147]:
1nyta_PU_118-147
CI=2.03


[148-165]:
1nyta_PU_148-165
CI=0.21


[166-181]:
1nyta_PU_166-181
CI=0.00


[182-199]:
1nyta_PU_182-199
CI=0.41


[200-216]:
1nyta_PU_200-216
CI=0.00


[217-240]:
1nyta_PU_217-240
CI=0.45


[241-271 ]:
1nyta_PU_241-271
CI=0.86