Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1nz0a_PU0_1-40
CI=1.68


[41-56]:
1nz0a_PU0_41-56
CI=0.79


[57-108 ]:
1nz0a_PU0_57-108
CI=0.98


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1nz0a_PU1_1-40
CI=1.68


[41-56]:
1nz0a_PU1_41-56
CI=0.79


[57-79]:
1nz0a_PU1_57-79
CI=0.16


[80-108 ]:
1nz0a_PU1_80-108
CI=0.06


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-19]:
1nz0a_PU_1-19
CI=0.00


[20-40]:
1nz0a_PU_20-40
CI=0.09


[41-56]:
1nz0a_PU_41-56
CI=0.79


[57-79]:
1nz0a_PU_57-79
CI=0.16


[80-108 ]:
1nz0a_PU_80-108
CI=0.06