Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-57]:
1nzna_PU0_1-57
CI=1.78


[58-120 ]:
1nzna_PU0_58-120
CI=1.79


Level 1
PU
Molecule needs Java 1.4 Structure


[1-57]:
1nzna_PU1_1-57
CI=1.78


[58-74]:
1nzna_PU1_58-74
CI=1.30


[75-120 ]:
1nzna_PU1_75-120
CI=1.57


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1nzna_PU2_1-16
CI=0.00


[17-38]:
1nzna_PU2_17-38
CI=1.18


[39-57]:
1nzna_PU2_39-57
CI=2.44


[58-74]:
1nzna_PU2_58-74
CI=1.30


[75-120 ]:
1nzna_PU2_75-120
CI=1.57


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1nzna_PU_1-16
CI=0.00


[17-38]:
1nzna_PU_17-38
CI=1.18


[39-57]:
1nzna_PU_39-57
CI=2.44


[58-74]:
1nzna_PU_58-74
CI=1.30


[75-94]:
1nzna_PU_75-94
CI=1.49


[95-120 ]:
1nzna_PU_95-120
CI=0.43