Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-260]:
1nzoa_PU0_1-260
CI=4.26


[261-352 ]:
1nzoa_PU0_261-352
CI=5.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nzoa_PU1_1-42
CI=1.19


[43-156]:
1nzoa_PU1_43-156
CI=3.13


[157-260]:
1nzoa_PU1_157-260
CI=3.12


[261-352 ]:
1nzoa_PU1_261-352
CI=5.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nzoa_PU2_1-42
CI=1.19


[43-60]:
1nzoa_PU2_43-60
CI=0.10


[61-115]:
1nzoa_PU2_61-115
CI=3.59


[116-156]:
1nzoa_PU2_116-156
CI=1.66


[157-260]:
1nzoa_PU2_157-260
CI=3.12


[261-352 ]:
1nzoa_PU2_261-352
CI=5.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nzoa_PU3_1-42
CI=1.19


[43-60]:
1nzoa_PU3_43-60
CI=0.10


[61-115]:
1nzoa_PU3_61-115
CI=3.59


[116-156]:
1nzoa_PU3_116-156
CI=1.66


[157-194]:
1nzoa_PU3_157-194
CI=0.71


[195-260]:
1nzoa_PU3_195-260
CI=3.46


[261-352 ]:
1nzoa_PU3_261-352
CI=5.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nzoa_PU4_1-42
CI=1.19


[43-60]:
1nzoa_PU4_43-60
CI=0.10


[61-115]:
1nzoa_PU4_61-115
CI=3.59


[116-140]:
1nzoa_PU4_116-140
CI=0.59


[141-156]:
1nzoa_PU4_141-156
CI=1.60


[157-194]:
1nzoa_PU4_157-194
CI=0.71


[195-260]:
1nzoa_PU4_195-260
CI=3.46


[261-352 ]:
1nzoa_PU4_261-352
CI=5.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nzoa_PU5_1-42
CI=1.19


[43-60]:
1nzoa_PU5_43-60
CI=0.10


[61-115]:
1nzoa_PU5_61-115
CI=3.59


[116-140]:
1nzoa_PU5_116-140
CI=0.59


[141-156]:
1nzoa_PU5_141-156
CI=1.60


[157-194]:
1nzoa_PU5_157-194
CI=0.71


[195-239]:
1nzoa_PU5_195-239
CI=3.67


[240-260]:
1nzoa_PU5_240-260
CI=0.00


[261-352 ]:
1nzoa_PU5_261-352
CI=5.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nzoa_PU6_1-42
CI=1.19


[43-60]:
1nzoa_PU6_43-60
CI=0.10


[61-115]:
1nzoa_PU6_61-115
CI=3.59


[116-140]:
1nzoa_PU6_116-140
CI=0.59


[141-156]:
1nzoa_PU6_141-156
CI=1.60


[157-194]:
1nzoa_PU6_157-194
CI=0.71


[195-239]:
1nzoa_PU6_195-239
CI=3.67


[240-260]:
1nzoa_PU6_240-260
CI=0.00


[261-304]:
1nzoa_PU6_261-304
CI=3.19


[305-344]:
1nzoa_PU6_305-344
CI=3.21


[345-352 ]:
1nzoa_PU6_345-352
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-42]:
1nzoa_PU7_1-42
CI=1.19


[43-60]:
1nzoa_PU7_43-60
CI=0.10


[61-95]:
1nzoa_PU7_61-95
CI=2.40


[96-115]:
1nzoa_PU7_96-115
CI=1.38


[116-140]:
1nzoa_PU7_116-140
CI=0.59


[141-156]:
1nzoa_PU7_141-156
CI=1.60


[157-194]:
1nzoa_PU7_157-194
CI=0.71


[195-239]:
1nzoa_PU7_195-239
CI=3.67


[240-260]:
1nzoa_PU7_240-260
CI=0.00


[261-304]:
1nzoa_PU7_261-304
CI=3.19


[305-344]:
1nzoa_PU7_305-344
CI=3.21


[345-352 ]:
1nzoa_PU7_345-352
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1nzoa_PU_1-20
CI=0.00


[21-42]:
1nzoa_PU_21-42
CI=0.17


[43-60]:
1nzoa_PU_43-60
CI=0.10


[61-95]:
1nzoa_PU_61-95
CI=2.40


[96-115]:
1nzoa_PU_96-115
CI=1.38


[116-140]:
1nzoa_PU_116-140
CI=0.59


[141-156]:
1nzoa_PU_141-156
CI=1.60


[157-194]:
1nzoa_PU_157-194
CI=0.71


[195-239]:
1nzoa_PU_195-239
CI=3.67


[240-260]:
1nzoa_PU_240-260
CI=0.00


[261-304]:
1nzoa_PU_261-304
CI=3.19


[305-344]:
1nzoa_PU_305-344
CI=3.21


[345-352 ]:
1nzoa_PU_345-352
CI=0.00