Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-52]:
1o13a_PU0_1-52
CI=4.07


[53-90]:
1o13a_PU0_53-90
CI=2.45


[91-105 ]:
1o13a_PU0_91-105
CI=0.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-52]:
1o13a_PU1_1-52
CI=4.07


[53-69]:
1o13a_PU1_53-69
CI=0.21


[70-90]:
1o13a_PU1_70-90
CI=0.97


[91-105 ]:
1o13a_PU1_91-105
CI=0.12


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-23]:
1o13a_PU_1-23
CI=2.05


[24-52]:
1o13a_PU_24-52
CI=2.67


[53-69]:
1o13a_PU_53-69
CI=0.21


[70-90]:
1o13a_PU_70-90
CI=0.97


[91-105 ]:
1o13a_PU_91-105
CI=0.12