Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-40]:
1o4wa_PU0_1-40
CI=2.05


[41-66]:
1o4wa_PU0_41-66
CI=0.77


[67-123 ]:
1o4wa_PU0_67-123
CI=1.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1o4wa_PU1_1-40
CI=2.05


[41-66]:
1o4wa_PU1_41-66
CI=0.77


[67-89]:
1o4wa_PU1_67-89
CI=1.04


[90-123 ]:
1o4wa_PU1_90-123
CI=1.67


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1o4wa_PU2_1-40
CI=2.05


[41-66]:
1o4wa_PU2_41-66
CI=0.77


[67-89]:
1o4wa_PU2_67-89
CI=1.04


[90-107]:
1o4wa_PU2_90-107
CI=0.70


[108-123 ]:
1o4wa_PU2_108-123
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1o4wa_PU_1-20
CI=0.46


[21-40]:
1o4wa_PU_21-40
CI=0.09


[41-66]:
1o4wa_PU_41-66
CI=0.77


[67-89]:
1o4wa_PU_67-89
CI=1.04


[90-107]:
1o4wa_PU_90-107
CI=0.70


[108-123 ]:
1o4wa_PU_108-123
CI=0.00