Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-95]:
1o4ya_PU0_1-95
CI=2.91


[96-234]:
1o4ya_PU0_96-234
CI=5.12


[235-270 ]:
1o4ya_PU0_235-270
CI=0.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU1_1-21
CI=0.18


[22-95]:
1o4ya_PU1_22-95
CI=3.62


[96-234]:
1o4ya_PU1_96-234
CI=5.12


[235-270 ]:
1o4ya_PU1_235-270
CI=0.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU2_1-21
CI=0.18


[22-95]:
1o4ya_PU2_22-95
CI=3.62


[96-234]:
1o4ya_PU2_96-234
CI=5.12


[235-254]:
1o4ya_PU2_235-254
CI=0.64


[255-270 ]:
1o4ya_PU2_255-270
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU3_1-21
CI=0.18


[22-95]:
1o4ya_PU3_22-95
CI=3.62


[96-182]:
1o4ya_PU3_96-182
CI=3.68


[183-225]:
1o4ya_PU3_183-225
CI=2.90


[226-234]:
1o4ya_PU3_226-234
CI=0.00


[235-254]:
1o4ya_PU3_235-254
CI=0.64


[255-270 ]:
1o4ya_PU3_255-270
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU4_1-21
CI=0.18


[22-95]:
1o4ya_PU4_22-95
CI=3.62


[96-182]:
1o4ya_PU4_96-182
CI=3.68


[183-208]:
1o4ya_PU4_183-208
CI=3.06


[209-225]:
1o4ya_PU4_209-225
CI=0.74


[226-234]:
1o4ya_PU4_226-234
CI=0.00


[235-254]:
1o4ya_PU4_235-254
CI=0.64


[255-270 ]:
1o4ya_PU4_255-270
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU5_1-21
CI=0.18


[22-46]:
1o4ya_PU5_22-46
CI=0.52


[47-95]:
1o4ya_PU5_47-95
CI=3.35


[96-182]:
1o4ya_PU5_96-182
CI=3.68


[183-208]:
1o4ya_PU5_183-208
CI=3.06


[209-225]:
1o4ya_PU5_209-225
CI=0.74


[226-234]:
1o4ya_PU5_226-234
CI=0.00


[235-254]:
1o4ya_PU5_235-254
CI=0.64


[255-270 ]:
1o4ya_PU5_255-270
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU6_1-21
CI=0.18


[22-46]:
1o4ya_PU6_22-46
CI=0.52


[47-95]:
1o4ya_PU6_47-95
CI=3.35


[96-136]:
1o4ya_PU6_96-136
CI=2.47


[137-182]:
1o4ya_PU6_137-182
CI=2.05


[183-208]:
1o4ya_PU6_183-208
CI=3.06


[209-225]:
1o4ya_PU6_209-225
CI=0.74


[226-234]:
1o4ya_PU6_226-234
CI=0.00


[235-254]:
1o4ya_PU6_235-254
CI=0.64


[255-270 ]:
1o4ya_PU6_255-270
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU7_1-21
CI=0.18


[22-46]:
1o4ya_PU7_22-46
CI=0.52


[47-95]:
1o4ya_PU7_47-95
CI=3.35


[96-112]:
1o4ya_PU7_96-112
CI=0.00


[113-136]:
1o4ya_PU7_113-136
CI=2.99


[137-182]:
1o4ya_PU7_137-182
CI=2.05


[183-208]:
1o4ya_PU7_183-208
CI=3.06


[209-225]:
1o4ya_PU7_209-225
CI=0.74


[226-234]:
1o4ya_PU7_226-234
CI=0.00


[235-254]:
1o4ya_PU7_235-254
CI=0.64


[255-270 ]:
1o4ya_PU7_255-270
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU8_1-21
CI=0.18


[22-46]:
1o4ya_PU8_22-46
CI=0.52


[47-95]:
1o4ya_PU8_47-95
CI=3.35


[96-112]:
1o4ya_PU8_96-112
CI=0.00


[113-136]:
1o4ya_PU8_113-136
CI=2.99


[137-165]:
1o4ya_PU8_137-165
CI=1.25


[166-182]:
1o4ya_PU8_166-182
CI=0.10


[183-208]:
1o4ya_PU8_183-208
CI=3.06


[209-225]:
1o4ya_PU8_209-225
CI=0.74


[226-234]:
1o4ya_PU8_226-234
CI=0.00


[235-254]:
1o4ya_PU8_235-254
CI=0.64


[255-270 ]:
1o4ya_PU8_255-270
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-21]:
1o4ya_PU_1-21
CI=0.18


[22-46]:
1o4ya_PU_22-46
CI=0.52


[47-69]:
1o4ya_PU_47-69
CI=0.90


[70-95]:
1o4ya_PU_70-95
CI=1.17


[96-112]:
1o4ya_PU_96-112
CI=0.00


[113-136]:
1o4ya_PU_113-136
CI=2.99


[137-165]:
1o4ya_PU_137-165
CI=1.25


[166-182]:
1o4ya_PU_166-182
CI=0.10


[183-208]:
1o4ya_PU_183-208
CI=3.06


[209-225]:
1o4ya_PU_209-225
CI=0.74


[226-234]:
1o4ya_PU_226-234
CI=0.00


[235-254]:
1o4ya_PU_235-254
CI=0.64


[255-270 ]:
1o4ya_PU_255-270
CI=0.00