Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o50a_PU0_1-16
CI=0.00


[17-89]:
1o50a_PU0_17-89
CI=3.24


[90-141 ]:
1o50a_PU0_90-141
CI=2.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o50a_PU1_1-16
CI=0.00


[17-56]:
1o50a_PU1_17-56
CI=2.49


[57-89]:
1o50a_PU1_57-89
CI=1.08


[90-141 ]:
1o50a_PU1_90-141
CI=2.58


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o50a_PU2_1-16
CI=0.00


[17-56]:
1o50a_PU2_17-56
CI=2.49


[57-73]:
1o50a_PU2_57-73
CI=0.65


[74-89]:
1o50a_PU2_74-89
CI=0.22


[90-141 ]:
1o50a_PU2_90-141
CI=2.58


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o50a_PU3_1-16
CI=0.00


[17-56]:
1o50a_PU3_17-56
CI=2.49


[57-73]:
1o50a_PU3_57-73
CI=0.65


[74-89]:
1o50a_PU3_74-89
CI=0.22


[90-110]:
1o50a_PU3_90-110
CI=0.70


[111-141 ]:
1o50a_PU3_111-141
CI=1.78


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1o50a_PU_1-16
CI=0.00


[17-39]:
1o50a_PU_17-39
CI=0.32


[40-56]:
1o50a_PU_40-56
CI=2.73


[57-73]:
1o50a_PU_57-73
CI=0.65


[74-89]:
1o50a_PU_74-89
CI=0.22


[90-110]:
1o50a_PU_90-110
CI=0.70


[111-141 ]:
1o50a_PU_111-141
CI=1.78