Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-71]:
1o54a_PU0_1-71
CI=3.51


[72-265 ]:
1o54a_PU0_72-265
CI=4.13


Level 1
PU
Molecule needs Java 1.4 Structure


[1-71]:
1o54a_PU1_1-71
CI=3.51


[72-162]:
1o54a_PU1_72-162
CI=3.75


[163-265 ]:
1o54a_PU1_163-265
CI=3.41


Level 2
PU
Molecule needs Java 1.4 Structure


[1-71]:
1o54a_PU2_1-71
CI=3.51


[72-162]:
1o54a_PU2_72-162
CI=3.75


[163-220]:
1o54a_PU2_163-220
CI=2.31


[221-251]:
1o54a_PU2_221-251
CI=1.77


[252-265 ]:
1o54a_PU2_252-265
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-71]:
1o54a_PU3_1-71
CI=3.51


[72-162]:
1o54a_PU3_72-162
CI=3.75


[163-202]:
1o54a_PU3_163-202
CI=2.71


[203-220]:
1o54a_PU3_203-220
CI=0.11


[221-251]:
1o54a_PU3_221-251
CI=1.77


[252-265 ]:
1o54a_PU3_252-265
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-71]:
1o54a_PU4_1-71
CI=3.51


[72-99]:
1o54a_PU4_72-99
CI=0.46


[100-162]:
1o54a_PU4_100-162
CI=4.13


[163-202]:
1o54a_PU4_163-202
CI=2.71


[203-220]:
1o54a_PU4_203-220
CI=0.11


[221-251]:
1o54a_PU4_221-251
CI=1.77


[252-265 ]:
1o54a_PU4_252-265
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-30]:
1o54a_PU5_1-30
CI=1.15


[31-51]:
1o54a_PU5_31-51
CI=1.60


[52-71]:
1o54a_PU5_52-71
CI=2.24


[72-99]:
1o54a_PU5_72-99
CI=0.46


[100-162]:
1o54a_PU5_100-162
CI=4.13


[163-202]:
1o54a_PU5_163-202
CI=2.71


[203-220]:
1o54a_PU5_203-220
CI=0.11


[221-251]:
1o54a_PU5_221-251
CI=1.77


[252-265 ]:
1o54a_PU5_252-265
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-30]:
1o54a_PU6_1-30
CI=1.15


[31-51]:
1o54a_PU6_31-51
CI=1.60


[52-71]:
1o54a_PU6_52-71
CI=2.24


[72-99]:
1o54a_PU6_72-99
CI=0.46


[100-133]:
1o54a_PU6_100-133
CI=3.03


[134-162]:
1o54a_PU6_134-162
CI=1.24


[163-202]:
1o54a_PU6_163-202
CI=2.71


[203-220]:
1o54a_PU6_203-220
CI=0.11


[221-251]:
1o54a_PU6_221-251
CI=1.77


[252-265 ]:
1o54a_PU6_252-265
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-30]:
1o54a_PU7_1-30
CI=1.15


[31-51]:
1o54a_PU7_31-51
CI=1.60


[52-71]:
1o54a_PU7_52-71
CI=2.24


[72-99]:
1o54a_PU7_72-99
CI=0.46


[100-133]:
1o54a_PU7_100-133
CI=3.03


[134-162]:
1o54a_PU7_134-162
CI=1.24


[163-185]:
1o54a_PU7_163-185
CI=0.24


[186-202]:
1o54a_PU7_186-202
CI=0.10


[203-220]:
1o54a_PU7_203-220
CI=0.11


[221-251]:
1o54a_PU7_221-251
CI=1.77


[252-265 ]:
1o54a_PU7_252-265
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-30]:
1o54a_PU_1-30
CI=1.15


[31-51]:
1o54a_PU_31-51
CI=1.60


[52-71]:
1o54a_PU_52-71
CI=2.24


[72-99]:
1o54a_PU_72-99
CI=0.46


[100-117]:
1o54a_PU_100-117
CI=0.21


[118-133]:
1o54a_PU_118-133
CI=0.34


[134-162]:
1o54a_PU_134-162
CI=1.24


[163-185]:
1o54a_PU_163-185
CI=0.24


[186-202]:
1o54a_PU_186-202
CI=0.10


[203-220]:
1o54a_PU_203-220
CI=0.11


[221-251]:
1o54a_PU_221-251
CI=1.77


[252-265 ]:
1o54a_PU_252-265
CI=0.00