Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-76]:
1o5ka_PU0_1-76
CI=2.86


[77-186]:
1o5ka_PU0_77-186
CI=3.85


[187-294 ]:
1o5ka_PU0_187-294
CI=2.48


Level 1
PU
Molecule needs Java 1.4 Structure


[1-76]:
1o5ka_PU1_1-76
CI=2.86


[77-186]:
1o5ka_PU1_77-186
CI=3.85


[187-240]:
1o5ka_PU1_187-240
CI=2.09


[241-294 ]:
1o5ka_PU1_241-294
CI=2.19


Level 2
PU
Molecule needs Java 1.4 Structure


[1-76]:
1o5ka_PU2_1-76
CI=2.86


[77-143]:
1o5ka_PU2_77-143
CI=2.98


[144-186]:
1o5ka_PU2_144-186
CI=2.69


[187-240]:
1o5ka_PU2_187-240
CI=2.09


[241-294 ]:
1o5ka_PU2_241-294
CI=2.19


Level 3
PU
Molecule needs Java 1.4 Structure


[1-76]:
1o5ka_PU3_1-76
CI=2.86


[77-143]:
1o5ka_PU3_77-143
CI=2.98


[144-186]:
1o5ka_PU3_144-186
CI=2.69


[187-208]:
1o5ka_PU3_187-208
CI=2.55


[209-240]:
1o5ka_PU3_209-240
CI=0.83


[241-294 ]:
1o5ka_PU3_241-294
CI=2.19


Level 4
PU
Molecule needs Java 1.4 Structure


[1-76]:
1o5ka_PU4_1-76
CI=2.86


[77-143]:
1o5ka_PU4_77-143
CI=2.98


[144-186]:
1o5ka_PU4_144-186
CI=2.69


[187-208]:
1o5ka_PU4_187-208
CI=2.55


[209-240]:
1o5ka_PU4_209-240
CI=0.83


[241-277]:
1o5ka_PU4_241-277
CI=1.64


[278-294 ]:
1o5ka_PU4_278-294
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-76]:
1o5ka_PU5_1-76
CI=2.86


[77-102]:
1o5ka_PU5_77-102
CI=1.58


[103-143]:
1o5ka_PU5_103-143
CI=1.62


[144-186]:
1o5ka_PU5_144-186
CI=2.69


[187-208]:
1o5ka_PU5_187-208
CI=2.55


[209-240]:
1o5ka_PU5_209-240
CI=0.83


[241-277]:
1o5ka_PU5_241-277
CI=1.64


[278-294 ]:
1o5ka_PU5_278-294
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1o5ka_PU6_1-40
CI=1.91


[41-76]:
1o5ka_PU6_41-76
CI=1.09


[77-102]:
1o5ka_PU6_77-102
CI=1.58


[103-143]:
1o5ka_PU6_103-143
CI=1.62


[144-186]:
1o5ka_PU6_144-186
CI=2.69


[187-208]:
1o5ka_PU6_187-208
CI=2.55


[209-240]:
1o5ka_PU6_209-240
CI=0.83


[241-277]:
1o5ka_PU6_241-277
CI=1.64


[278-294 ]:
1o5ka_PU6_278-294
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1o5ka_PU7_1-40
CI=1.91


[41-60]:
1o5ka_PU7_41-60
CI=0.45


[61-76]:
1o5ka_PU7_61-76
CI=0.34


[77-102]:
1o5ka_PU7_77-102
CI=1.58


[103-143]:
1o5ka_PU7_103-143
CI=1.62


[144-186]:
1o5ka_PU7_144-186
CI=2.69


[187-208]:
1o5ka_PU7_187-208
CI=2.55


[209-240]:
1o5ka_PU7_209-240
CI=0.83


[241-277]:
1o5ka_PU7_241-277
CI=1.64


[278-294 ]:
1o5ka_PU7_278-294
CI=0.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-24]:
1o5ka_PU8_1-24
CI=1.01


[25-40]:
1o5ka_PU8_25-40
CI=0.21


[41-60]:
1o5ka_PU8_41-60
CI=0.45


[61-76]:
1o5ka_PU8_61-76
CI=0.34


[77-102]:
1o5ka_PU8_77-102
CI=1.58


[103-143]:
1o5ka_PU8_103-143
CI=1.62


[144-186]:
1o5ka_PU8_144-186
CI=2.69


[187-208]:
1o5ka_PU8_187-208
CI=2.55


[209-240]:
1o5ka_PU8_209-240
CI=0.83


[241-277]:
1o5ka_PU8_241-277
CI=1.64


[278-294 ]:
1o5ka_PU8_278-294
CI=0.22


Level 9
PU
Molecule needs Java 1.4 Structure


[1-24]:
1o5ka_PU9_1-24
CI=1.01


[25-40]:
1o5ka_PU9_25-40
CI=0.21


[41-60]:
1o5ka_PU9_41-60
CI=0.45


[61-76]:
1o5ka_PU9_61-76
CI=0.34


[77-102]:
1o5ka_PU9_77-102
CI=1.58


[103-127]:
1o5ka_PU9_103-127
CI=0.14


[128-143]:
1o5ka_PU9_128-143
CI=0.68


[144-186]:
1o5ka_PU9_144-186
CI=2.69


[187-208]:
1o5ka_PU9_187-208
CI=2.55


[209-240]:
1o5ka_PU9_209-240
CI=0.83


[241-277]:
1o5ka_PU9_241-277
CI=1.64


[278-294 ]:
1o5ka_PU9_278-294
CI=0.22


Level 10
PU
Molecule needs Java 1.4 Structure


[1-24]:
1o5ka_PU10_1-24
CI=1.01


[25-40]:
1o5ka_PU10_25-40
CI=0.21


[41-60]:
1o5ka_PU10_41-60
CI=0.45


[61-76]:
1o5ka_PU10_61-76
CI=0.34


[77-102]:
1o5ka_PU10_77-102
CI=1.58


[103-127]:
1o5ka_PU10_103-127
CI=0.14


[128-143]:
1o5ka_PU10_128-143
CI=0.68


[144-160]:
1o5ka_PU10_144-160
CI=0.44


[161-186]:
1o5ka_PU10_161-186
CI=1.07


[187-208]:
1o5ka_PU10_187-208
CI=2.55


[209-240]:
1o5ka_PU10_209-240
CI=0.83


[241-277]:
1o5ka_PU10_241-277
CI=1.64


[278-294 ]:
1o5ka_PU10_278-294
CI=0.22


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-24]:
1o5ka_PU_1-24
CI=1.01


[25-40]:
1o5ka_PU_25-40
CI=0.21


[41-60]:
1o5ka_PU_41-60
CI=0.45


[61-76]:
1o5ka_PU_61-76
CI=0.34


[77-102]:
1o5ka_PU_77-102
CI=1.58


[103-127]:
1o5ka_PU_103-127
CI=0.14


[128-143]:
1o5ka_PU_128-143
CI=0.68


[144-160]:
1o5ka_PU_144-160
CI=0.44


[161-186]:
1o5ka_PU_161-186
CI=1.07


[187-208]:
1o5ka_PU_187-208
CI=2.55


[209-240]:
1o5ka_PU_209-240
CI=0.83


[241-261]:
1o5ka_PU_241-261
CI=0.70


[262-277]:
1o5ka_PU_262-277
CI=0.57


[278-294 ]:
1o5ka_PU_278-294
CI=0.22