Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU0_1-18
CI=0.10


[19-152]:
1o66a_PU0_19-152
CI=3.66


[153-234 ]:
1o66a_PU0_153-234
CI=3.32


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU1_1-18
CI=0.10


[19-152]:
1o66a_PU1_19-152
CI=3.66


[153-187]:
1o66a_PU1_153-187
CI=4.19


[188-234 ]:
1o66a_PU1_188-234
CI=1.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU2_1-18
CI=0.10


[19-101]:
1o66a_PU2_19-101
CI=3.39


[102-152]:
1o66a_PU2_102-152
CI=2.26


[153-187]:
1o66a_PU2_153-187
CI=4.19


[188-234 ]:
1o66a_PU2_188-234
CI=1.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU3_1-18
CI=0.10


[19-101]:
1o66a_PU3_19-101
CI=3.39


[102-152]:
1o66a_PU3_102-152
CI=2.26


[153-187]:
1o66a_PU3_153-187
CI=4.19


[188-205]:
1o66a_PU3_188-205
CI=1.13


[206-234 ]:
1o66a_PU3_206-234
CI=0.65


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU4_1-18
CI=0.10


[19-75]:
1o66a_PU4_19-75
CI=2.92


[76-101]:
1o66a_PU4_76-101
CI=1.01


[102-152]:
1o66a_PU4_102-152
CI=2.26


[153-187]:
1o66a_PU4_153-187
CI=4.19


[188-205]:
1o66a_PU4_188-205
CI=1.13


[206-234 ]:
1o66a_PU4_206-234
CI=0.65


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU5_1-18
CI=0.10


[19-34]:
1o66a_PU5_19-34
CI=0.12


[35-57]:
1o66a_PU5_35-57
CI=0.73


[58-75]:
1o66a_PU5_58-75
CI=0.20


[76-101]:
1o66a_PU5_76-101
CI=1.01


[102-152]:
1o66a_PU5_102-152
CI=2.26


[153-187]:
1o66a_PU5_153-187
CI=4.19


[188-205]:
1o66a_PU5_188-205
CI=1.13


[206-234 ]:
1o66a_PU5_206-234
CI=0.65


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU6_1-18
CI=0.10


[19-34]:
1o66a_PU6_19-34
CI=0.12


[35-57]:
1o66a_PU6_35-57
CI=0.73


[58-75]:
1o66a_PU6_58-75
CI=0.20


[76-101]:
1o66a_PU6_76-101
CI=1.01


[102-134]:
1o66a_PU6_102-134
CI=1.27


[135-152]:
1o66a_PU6_135-152
CI=0.10


[153-187]:
1o66a_PU6_153-187
CI=4.19


[188-205]:
1o66a_PU6_188-205
CI=1.13


[206-234 ]:
1o66a_PU6_206-234
CI=0.65


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU7_1-18
CI=0.10


[19-34]:
1o66a_PU7_19-34
CI=0.12


[35-57]:
1o66a_PU7_35-57
CI=0.73


[58-75]:
1o66a_PU7_58-75
CI=0.20


[76-101]:
1o66a_PU7_76-101
CI=1.01


[102-118]:
1o66a_PU7_102-118
CI=0.10


[119-134]:
1o66a_PU7_119-134
CI=0.00


[135-152]:
1o66a_PU7_135-152
CI=0.10


[153-187]:
1o66a_PU7_153-187
CI=4.19


[188-205]:
1o66a_PU7_188-205
CI=1.13


[206-234 ]:
1o66a_PU7_206-234
CI=0.65


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1o66a_PU_1-18
CI=0.10


[19-34]:
1o66a_PU_19-34
CI=0.12


[35-57]:
1o66a_PU_35-57
CI=0.73


[58-75]:
1o66a_PU_58-75
CI=0.20


[76-101]:
1o66a_PU_76-101
CI=1.01


[102-118]:
1o66a_PU_102-118
CI=0.10


[119-134]:
1o66a_PU_119-134
CI=0.00


[135-152]:
1o66a_PU_135-152
CI=0.10


[153-171]:
1o66a_PU_153-171
CI=0.00


[172-187]:
1o66a_PU_172-187
CI=2.42


[188-205]:
1o66a_PU_188-205
CI=1.13


[206-234 ]:
1o66a_PU_206-234
CI=0.65