Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-38]:
1o6da_PU0_1-38
CI=2.12


[39-123]:
1o6da_PU0_39-123
CI=2.84


[124-147 ]:
1o6da_PU0_124-147
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1o6da_PU1_1-38
CI=2.12


[39-75]:
1o6da_PU1_39-75
CI=0.46


[76-93]:
1o6da_PU1_76-93
CI=0.00


[94-123]:
1o6da_PU1_94-123
CI=0.06


[124-147 ]:
1o6da_PU1_124-147
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-38]:
1o6da_PU2_1-38
CI=2.12


[39-55]:
1o6da_PU2_39-55
CI=0.86


[56-75]:
1o6da_PU2_56-75
CI=0.09


[76-93]:
1o6da_PU2_76-93
CI=0.00


[94-123]:
1o6da_PU2_94-123
CI=0.06


[124-147 ]:
1o6da_PU2_124-147
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1o6da_PU_1-18
CI=0.00


[19-38]:
1o6da_PU_19-38
CI=0.46


[39-55]:
1o6da_PU_39-55
CI=0.86


[56-75]:
1o6da_PU_56-75
CI=0.09


[76-93]:
1o6da_PU_76-93
CI=0.00


[94-123]:
1o6da_PU_94-123
CI=0.06


[124-147 ]:
1o6da_PU_124-147
CI=0.00