Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU0_1-78
CI=4.63


[79-303 ]:
1o6za_PU0_79-303
CI=3.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU1_1-78
CI=4.63


[79-194]:
1o6za_PU1_79-194
CI=2.49


[195-221]:
1o6za_PU1_195-221
CI=0.21


[222-303 ]:
1o6za_PU1_222-303
CI=2.57


Level 2
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU2_1-78
CI=4.63


[79-143]:
1o6za_PU2_79-143
CI=2.03


[144-194]:
1o6za_PU2_144-194
CI=2.73


[195-221]:
1o6za_PU2_195-221
CI=0.21


[222-303 ]:
1o6za_PU2_222-303
CI=2.57


Level 3
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU3_1-78
CI=4.63


[79-143]:
1o6za_PU3_79-143
CI=2.03


[144-194]:
1o6za_PU3_144-194
CI=2.73


[195-221]:
1o6za_PU3_195-221
CI=0.21


[222-278]:
1o6za_PU3_222-278
CI=3.08


[279-303 ]:
1o6za_PU3_279-303
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU4_1-78
CI=4.63


[79-95]:
1o6za_PU4_79-95
CI=0.32


[96-143]:
1o6za_PU4_96-143
CI=2.19


[144-194]:
1o6za_PU4_144-194
CI=2.73


[195-221]:
1o6za_PU4_195-221
CI=0.21


[222-278]:
1o6za_PU4_222-278
CI=3.08


[279-303 ]:
1o6za_PU4_279-303
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU5_1-78
CI=4.63


[79-95]:
1o6za_PU5_79-95
CI=0.32


[96-143]:
1o6za_PU5_96-143
CI=2.19


[144-194]:
1o6za_PU5_144-194
CI=2.73


[195-221]:
1o6za_PU5_195-221
CI=0.21


[222-238]:
1o6za_PU5_222-238
CI=0.00


[239-278]:
1o6za_PU5_239-278
CI=3.55


[279-303 ]:
1o6za_PU5_279-303
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU6_1-78
CI=4.63


[79-95]:
1o6za_PU6_79-95
CI=0.32


[96-112]:
1o6za_PU6_96-112
CI=0.00


[113-143]:
1o6za_PU6_113-143
CI=2.50


[144-194]:
1o6za_PU6_144-194
CI=2.73


[195-221]:
1o6za_PU6_195-221
CI=0.21


[222-238]:
1o6za_PU6_222-238
CI=0.00


[239-278]:
1o6za_PU6_239-278
CI=3.55


[279-303 ]:
1o6za_PU6_279-303
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-78]:
1o6za_PU7_1-78
CI=4.63


[79-95]:
1o6za_PU7_79-95
CI=0.32


[96-112]:
1o6za_PU7_96-112
CI=0.00


[113-143]:
1o6za_PU7_113-143
CI=2.50


[144-169]:
1o6za_PU7_144-169
CI=1.08


[170-194]:
1o6za_PU7_170-194
CI=1.79


[195-221]:
1o6za_PU7_195-221
CI=0.21


[222-238]:
1o6za_PU7_222-238
CI=0.00


[239-278]:
1o6za_PU7_239-278
CI=3.55


[279-303 ]:
1o6za_PU7_279-303
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-33]:
1o6za_PU8_1-33
CI=2.88


[34-62]:
1o6za_PU8_34-62
CI=1.43


[63-78]:
1o6za_PU8_63-78
CI=0.11


[79-95]:
1o6za_PU8_79-95
CI=0.32


[96-112]:
1o6za_PU8_96-112
CI=0.00


[113-143]:
1o6za_PU8_113-143
CI=2.50


[144-169]:
1o6za_PU8_144-169
CI=1.08


[170-194]:
1o6za_PU8_170-194
CI=1.79


[195-221]:
1o6za_PU8_195-221
CI=0.21


[222-238]:
1o6za_PU8_222-238
CI=0.00


[239-278]:
1o6za_PU8_239-278
CI=3.55


[279-303 ]:
1o6za_PU8_279-303
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-33]:
1o6za_PU9_1-33
CI=2.88


[34-62]:
1o6za_PU9_34-62
CI=1.43


[63-78]:
1o6za_PU9_63-78
CI=0.11


[79-95]:
1o6za_PU9_79-95
CI=0.32


[96-112]:
1o6za_PU9_96-112
CI=0.00


[113-143]:
1o6za_PU9_113-143
CI=2.50


[144-169]:
1o6za_PU9_144-169
CI=1.08


[170-194]:
1o6za_PU9_170-194
CI=1.79


[195-221]:
1o6za_PU9_195-221
CI=0.21


[222-238]:
1o6za_PU9_222-238
CI=0.00


[239-262]:
1o6za_PU9_239-262
CI=1.58


[263-278]:
1o6za_PU9_263-278
CI=2.09


[279-303 ]:
1o6za_PU9_279-303
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-17]:
1o6za_PU_1-17
CI=1.08


[18-33]:
1o6za_PU_18-33
CI=0.45


[34-62]:
1o6za_PU_34-62
CI=1.43


[63-78]:
1o6za_PU_63-78
CI=0.11


[79-95]:
1o6za_PU_79-95
CI=0.32


[96-112]:
1o6za_PU_96-112
CI=0.00


[113-143]:
1o6za_PU_113-143
CI=2.50


[144-169]:
1o6za_PU_144-169
CI=1.08


[170-194]:
1o6za_PU_170-194
CI=1.79


[195-221]:
1o6za_PU_195-221
CI=0.21


[222-238]:
1o6za_PU_222-238
CI=0.00


[239-262]:
1o6za_PU_239-262
CI=1.58


[263-278]:
1o6za_PU_263-278
CI=2.09


[279-303 ]:
1o6za_PU_279-303
CI=0.00