Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1o7ia_PU0_1-24
CI=1.25


[25-40]:
1o7ia_PU0_25-40
CI=1.98


[41-115 ]:
1o7ia_PU0_41-115
CI=3.92


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-24]:
1o7ia_PU_1-24
CI=1.25


[25-40]:
1o7ia_PU_25-40
CI=1.98


[41-66]:
1o7ia_PU_41-66
CI=1.75


[67-101]:
1o7ia_PU_67-101
CI=2.73


[102-115 ]:
1o7ia_PU_102-115
CI=0.00