Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-42]:
1o7sa_PU0_1-42
CI=1.18


[43-61]:
1o7sa_PU0_43-61
CI=1.85


[62-112 ]:
1o7sa_PU0_62-112
CI=2.91


Level 1
PU
Molecule needs Java 1.4 Structure


[1-26]:
1o7sa_PU1_1-26
CI=1.52


[27-42]:
1o7sa_PU1_27-42
CI=0.00


[43-61]:
1o7sa_PU1_43-61
CI=1.85


[62-112 ]:
1o7sa_PU1_62-112
CI=2.91


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-26]:
1o7sa_PU_1-26
CI=1.52


[27-42]:
1o7sa_PU_27-42
CI=0.00


[43-61]:
1o7sa_PU_43-61
CI=1.85


[62-80]:
1o7sa_PU_62-80
CI=2.76


[81-112 ]:
1o7sa_PU_81-112
CI=2.67