Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-63]:
1o8va_PU0_1-63
CI=2.46


[64-109]:
1o8va_PU0_64-109
CI=3.72


[110-132 ]:
1o8va_PU0_110-132
CI=2.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-37]:
1o8va_PU1_1-37
CI=0.61


[38-63]:
1o8va_PU1_38-63
CI=2.99


[64-109]:
1o8va_PU1_64-109
CI=3.72


[110-132 ]:
1o8va_PU1_110-132
CI=2.38


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-37]:
1o8va_PU_1-37
CI=0.61


[38-63]:
1o8va_PU_38-63
CI=2.99


[64-87]:
1o8va_PU_64-87
CI=2.59


[88-109]:
1o8va_PU_88-109
CI=2.29


[110-132 ]:
1o8va_PU_110-132
CI=2.38