Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-121]:
1o8xa_PU0_1-121
CI=3.67


[122-143 ]:
1o8xa_PU0_122-143
CI=1.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-42]:
1o8xa_PU1_1-42
CI=1.00


[43-59]:
1o8xa_PU1_43-59
CI=0.00


[60-121]:
1o8xa_PU1_60-121
CI=1.75


[122-143 ]:
1o8xa_PU1_122-143
CI=1.02


Level 2
PU
Molecule needs Java 1.4 Structure


[1-26]:
1o8xa_PU2_1-26
CI=1.31


[27-42]:
1o8xa_PU2_27-42
CI=0.45


[43-59]:
1o8xa_PU2_43-59
CI=0.00


[60-121]:
1o8xa_PU2_60-121
CI=1.75


[122-143 ]:
1o8xa_PU2_122-143
CI=1.02


Level 3
PU
Molecule needs Java 1.4 Structure


[1-26]:
1o8xa_PU3_1-26
CI=1.31


[27-42]:
1o8xa_PU3_27-42
CI=0.45


[43-59]:
1o8xa_PU3_43-59
CI=0.00


[60-98]:
1o8xa_PU3_60-98
CI=2.13


[99-121]:
1o8xa_PU3_99-121
CI=0.74


[122-143 ]:
1o8xa_PU3_122-143
CI=1.02


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-26]:
1o8xa_PU_1-26
CI=1.31


[27-42]:
1o8xa_PU_27-42
CI=0.45


[43-59]:
1o8xa_PU_43-59
CI=0.00


[60-82]:
1o8xa_PU_60-82
CI=0.55


[83-98]:
1o8xa_PU_83-98
CI=0.11


[99-121]:
1o8xa_PU_99-121
CI=0.74


[122-143 ]:
1o8xa_PU_122-143
CI=1.02