Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-226]:
1o97d_PU0_1-226
CI=4.50


[227-251 ]:
1o97d_PU0_227-251
CI=0.22


Level 1
PU
Molecule needs Java 1.4 Structure


[1-95]:
1o97d_PU1_1-95
CI=3.22


[96-186]:
1o97d_PU1_96-186
CI=4.08


[187-226]:
1o97d_PU1_187-226
CI=0.14


[227-251 ]:
1o97d_PU1_227-251
CI=0.22


Level 2
PU
Molecule needs Java 1.4 Structure


[1-95]:
1o97d_PU2_1-95
CI=3.22


[96-186]:
1o97d_PU2_96-186
CI=4.08


[187-210]:
1o97d_PU2_187-210
CI=0.15


[211-226]:
1o97d_PU2_211-226
CI=0.00


[227-251 ]:
1o97d_PU2_227-251
CI=0.22


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o97d_PU3_1-16
CI=0.00


[17-34]:
1o97d_PU3_17-34
CI=1.14


[35-95]:
1o97d_PU3_35-95
CI=2.08


[96-186]:
1o97d_PU3_96-186
CI=4.08


[187-210]:
1o97d_PU3_187-210
CI=0.15


[211-226]:
1o97d_PU3_211-226
CI=0.00


[227-251 ]:
1o97d_PU3_227-251
CI=0.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o97d_PU4_1-16
CI=0.00


[17-34]:
1o97d_PU4_17-34
CI=1.14


[35-56]:
1o97d_PU4_35-56
CI=0.09


[57-95]:
1o97d_PU4_57-95
CI=2.50


[96-186]:
1o97d_PU4_96-186
CI=4.08


[187-210]:
1o97d_PU4_187-210
CI=0.15


[211-226]:
1o97d_PU4_211-226
CI=0.00


[227-251 ]:
1o97d_PU4_227-251
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o97d_PU5_1-16
CI=0.00


[17-34]:
1o97d_PU5_17-34
CI=1.14


[35-56]:
1o97d_PU5_35-56
CI=0.09


[57-95]:
1o97d_PU5_57-95
CI=2.50


[96-139]:
1o97d_PU5_96-139
CI=1.73


[140-186]:
1o97d_PU5_140-186
CI=4.11


[187-210]:
1o97d_PU5_187-210
CI=0.15


[211-226]:
1o97d_PU5_211-226
CI=0.00


[227-251 ]:
1o97d_PU5_227-251
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o97d_PU6_1-16
CI=0.00


[17-34]:
1o97d_PU6_17-34
CI=1.14


[35-56]:
1o97d_PU6_35-56
CI=0.09


[57-95]:
1o97d_PU6_57-95
CI=2.50


[96-113]:
1o97d_PU6_96-113
CI=0.00


[114-139]:
1o97d_PU6_114-139
CI=1.09


[140-186]:
1o97d_PU6_140-186
CI=4.11


[187-210]:
1o97d_PU6_187-210
CI=0.15


[211-226]:
1o97d_PU6_211-226
CI=0.00


[227-251 ]:
1o97d_PU6_227-251
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1o97d_PU7_1-16
CI=0.00


[17-34]:
1o97d_PU7_17-34
CI=1.14


[35-56]:
1o97d_PU7_35-56
CI=0.09


[57-74]:
1o97d_PU7_57-74
CI=0.41


[75-95]:
1o97d_PU7_75-95
CI=0.27


[96-113]:
1o97d_PU7_96-113
CI=0.00


[114-139]:
1o97d_PU7_114-139
CI=1.09


[140-186]:
1o97d_PU7_140-186
CI=4.11


[187-210]:
1o97d_PU7_187-210
CI=0.15


[211-226]:
1o97d_PU7_211-226
CI=0.00


[227-251 ]:
1o97d_PU7_227-251
CI=0.22


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-16]:
1o97d_PU_1-16
CI=0.00


[17-34]:
1o97d_PU_17-34
CI=1.14


[35-56]:
1o97d_PU_35-56
CI=0.09


[57-74]:
1o97d_PU_57-74
CI=0.41


[75-95]:
1o97d_PU_75-95
CI=0.27


[96-113]:
1o97d_PU_96-113
CI=0.00


[114-139]:
1o97d_PU_114-139
CI=1.09


[140-162]:
1o97d_PU_140-162
CI=1.96


[163-186]:
1o97d_PU_163-186
CI=0.23


[187-210]:
1o97d_PU_187-210
CI=0.15


[211-226]:
1o97d_PU_211-226
CI=0.00


[227-251 ]:
1o97d_PU_227-251
CI=0.22