Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o9wa_PU0_1-21
CI=0.00


[22-125]:
1o9wa_PU0_22-125
CI=5.87


[126-169 ]:
1o9wa_PU0_126-169
CI=2.49


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o9wa_PU1_1-21
CI=0.00


[22-46]:
1o9wa_PU1_22-46
CI=0.00


[47-104]:
1o9wa_PU1_47-104
CI=4.68


[105-125]:
1o9wa_PU1_105-125
CI=0.09


[126-169 ]:
1o9wa_PU1_126-169
CI=2.49


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1o9wa_PU2_1-21
CI=0.00


[22-46]:
1o9wa_PU2_22-46
CI=0.00


[47-63]:
1o9wa_PU2_47-63
CI=0.00


[64-91]:
1o9wa_PU2_64-91
CI=2.45


[92-104]:
1o9wa_PU2_92-104
CI=0.00


[105-125]:
1o9wa_PU2_105-125
CI=0.09


[126-169 ]:
1o9wa_PU2_126-169
CI=2.49


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-21]:
1o9wa_PU_1-21
CI=0.00


[22-46]:
1o9wa_PU_22-46
CI=0.00


[47-63]:
1o9wa_PU_47-63
CI=0.00


[64-91]:
1o9wa_PU_64-91
CI=2.45


[92-104]:
1o9wa_PU_92-104
CI=0.00


[105-125]:
1o9wa_PU_105-125
CI=0.09


[126-142]:
1o9wa_PU_126-142
CI=0.00


[143-169 ]:
1o9wa_PU_143-169
CI=0.21