Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1oa8a_PU0_1-16
CI=0.00


[17-50]:
1oa8a_PU0_17-50
CI=2.02


[51-128 ]:
1oa8a_PU0_51-128
CI=5.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1oa8a_PU1_1-16
CI=0.00


[17-50]:
1oa8a_PU1_17-50
CI=2.02


[51-85]:
1oa8a_PU1_51-85
CI=3.83


[86-116]:
1oa8a_PU1_86-116
CI=4.21


[117-128 ]:
1oa8a_PU1_117-128
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1oa8a_PU_1-16
CI=0.00


[17-33]:
1oa8a_PU_17-33
CI=2.29


[34-50]:
1oa8a_PU_34-50
CI=0.65


[51-85]:
1oa8a_PU_51-85
CI=3.83


[86-116]:
1oa8a_PU_86-116
CI=4.21


[117-128 ]:
1oa8a_PU_117-128
CI=0.00