Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-198]:
1oaa0_PU0_1-198
CI=4.11


[199-232]:
1oaa0_PU0_199-232
CI=1.22


[233-259 ]:
1oaa0_PU0_233-259
CI=0.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-97]:
1oaa0_PU1_1-97
CI=4.15


[98-198]:
1oaa0_PU1_98-198
CI=2.65


[199-232]:
1oaa0_PU1_199-232
CI=1.22


[233-259 ]:
1oaa0_PU1_233-259
CI=0.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-97]:
1oaa0_PU2_1-97
CI=4.15


[98-113]:
1oaa0_PU2_98-113
CI=0.00


[114-146]:
1oaa0_PU2_114-146
CI=0.00


[147-198]:
1oaa0_PU2_147-198
CI=2.65


[199-232]:
1oaa0_PU2_199-232
CI=1.22


[233-259 ]:
1oaa0_PU2_233-259
CI=0.47


Level 3
PU
Molecule needs Java 1.4 Structure


[1-97]:
1oaa0_PU3_1-97
CI=4.15


[98-113]:
1oaa0_PU3_98-113
CI=0.00


[114-130]:
1oaa0_PU3_114-130
CI=0.00


[131-146]:
1oaa0_PU3_131-146
CI=0.00


[147-198]:
1oaa0_PU3_147-198
CI=2.65


[199-232]:
1oaa0_PU3_199-232
CI=1.22


[233-259 ]:
1oaa0_PU3_233-259
CI=0.47


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1oaa0_PU4_1-40
CI=3.16


[41-85]:
1oaa0_PU4_41-85
CI=1.56


[86-97]:
1oaa0_PU4_86-97
CI=0.00


[98-113]:
1oaa0_PU4_98-113
CI=0.00


[114-130]:
1oaa0_PU4_114-130
CI=0.00


[131-146]:
1oaa0_PU4_131-146
CI=0.00


[147-198]:
1oaa0_PU4_147-198
CI=2.65


[199-232]:
1oaa0_PU4_199-232
CI=1.22


[233-259 ]:
1oaa0_PU4_233-259
CI=0.47


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1oaa0_PU5_1-40
CI=3.16


[41-66]:
1oaa0_PU5_41-66
CI=0.92


[67-85]:
1oaa0_PU5_67-85
CI=1.08


[86-97]:
1oaa0_PU5_86-97
CI=0.00


[98-113]:
1oaa0_PU5_98-113
CI=0.00


[114-130]:
1oaa0_PU5_114-130
CI=0.00


[131-146]:
1oaa0_PU5_131-146
CI=0.00


[147-198]:
1oaa0_PU5_147-198
CI=2.65


[199-232]:
1oaa0_PU5_199-232
CI=1.22


[233-259 ]:
1oaa0_PU5_233-259
CI=0.47


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1oaa0_PU6_1-40
CI=3.16


[41-66]:
1oaa0_PU6_41-66
CI=0.92


[67-85]:
1oaa0_PU6_67-85
CI=1.08


[86-97]:
1oaa0_PU6_86-97
CI=0.00


[98-113]:
1oaa0_PU6_98-113
CI=0.00


[114-130]:
1oaa0_PU6_114-130
CI=0.00


[131-146]:
1oaa0_PU6_131-146
CI=0.00


[147-176]:
1oaa0_PU6_147-176
CI=1.32


[177-198]:
1oaa0_PU6_177-198
CI=0.92


[199-232]:
1oaa0_PU6_199-232
CI=1.22


[233-259 ]:
1oaa0_PU6_233-259
CI=0.47


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1oaa0_PU7_1-40
CI=3.16


[41-66]:
1oaa0_PU7_41-66
CI=0.92


[67-85]:
1oaa0_PU7_67-85
CI=1.08


[86-97]:
1oaa0_PU7_86-97
CI=0.00


[98-113]:
1oaa0_PU7_98-113
CI=0.00


[114-130]:
1oaa0_PU7_114-130
CI=0.00


[131-146]:
1oaa0_PU7_131-146
CI=0.00


[147-176]:
1oaa0_PU7_147-176
CI=1.32


[177-198]:
1oaa0_PU7_177-198
CI=0.92


[199-215]:
1oaa0_PU7_199-215
CI=0.11


[216-232]:
1oaa0_PU7_216-232
CI=0.11


[233-259 ]:
1oaa0_PU7_233-259
CI=0.47


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-23]:
1oaa0_PU_1-23
CI=0.81


[24-40]:
1oaa0_PU_24-40
CI=0.11


[41-66]:
1oaa0_PU_41-66
CI=0.92


[67-85]:
1oaa0_PU_67-85
CI=1.08


[86-97]:
1oaa0_PU_86-97
CI=0.00


[98-113]:
1oaa0_PU_98-113
CI=0.00


[114-130]:
1oaa0_PU_114-130
CI=0.00


[131-146]:
1oaa0_PU_131-146
CI=0.00


[147-176]:
1oaa0_PU_147-176
CI=1.32


[177-198]:
1oaa0_PU_177-198
CI=0.92


[199-215]:
1oaa0_PU_199-215
CI=0.11


[216-232]:
1oaa0_PU_216-232
CI=0.11


[233-259 ]:
1oaa0_PU_233-259
CI=0.47