Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-48]:
1oala_PU0_1-48
CI=2.74


[49-68]:
1oala_PU0_49-68
CI=3.54


[69-151 ]:
1oala_PU0_69-151
CI=3.72


Level 1
PU
Molecule needs Java 1.4 Structure


[1-48]:
1oala_PU1_1-48
CI=2.74


[49-68]:
1oala_PU1_49-68
CI=3.54


[69-92]:
1oala_PU1_69-92
CI=3.38


[93-108]:
1oala_PU1_93-108
CI=1.26


[109-151 ]:
1oala_PU1_109-151
CI=2.48


Level 2
PU
Molecule needs Java 1.4 Structure


[1-48]:
1oala_PU2_1-48
CI=2.74


[49-68]:
1oala_PU2_49-68
CI=3.54


[69-92]:
1oala_PU2_69-92
CI=3.38


[93-108]:
1oala_PU2_93-108
CI=1.26


[109-125]:
1oala_PU2_109-125
CI=0.00


[126-151 ]:
1oala_PU2_126-151
CI=1.83


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1oala_PU_1-20
CI=2.53


[21-48]:
1oala_PU_21-48
CI=0.61


[49-68]:
1oala_PU_49-68
CI=3.54


[69-92]:
1oala_PU_69-92
CI=3.38


[93-108]:
1oala_PU_93-108
CI=1.26


[109-125]:
1oala_PU_109-125
CI=0.00


[126-151 ]:
1oala_PU_126-151
CI=1.83