Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-110]:
1obda_PU0_1-110
CI=3.24


[111-252]:
1obda_PU0_111-252
CI=3.85


[253-298 ]:
1obda_PU0_253-298
CI=1.15


Level 1
PU
Molecule needs Java 1.4 Structure


[1-110]:
1obda_PU1_1-110
CI=3.24


[111-252]:
1obda_PU1_111-252
CI=3.85


[253-282]:
1obda_PU1_253-282
CI=1.12


[283-298 ]:
1obda_PU1_283-298
CI=0.68


Level 2
PU
Molecule needs Java 1.4 Structure


[1-57]:
1obda_PU2_1-57
CI=3.38


[58-73]:
1obda_PU2_58-73
CI=0.45


[74-110]:
1obda_PU2_74-110
CI=1.07


[111-252]:
1obda_PU2_111-252
CI=3.85


[253-282]:
1obda_PU2_253-282
CI=1.12


[283-298 ]:
1obda_PU2_283-298
CI=0.68


Level 3
PU
Molecule needs Java 1.4 Structure


[1-57]:
1obda_PU3_1-57
CI=3.38


[58-73]:
1obda_PU3_58-73
CI=0.45


[74-110]:
1obda_PU3_74-110
CI=1.07


[111-126]:
1obda_PU3_111-126
CI=0.00


[127-147]:
1obda_PU3_127-147
CI=1.15


[148-252]:
1obda_PU3_148-252
CI=2.53


[253-282]:
1obda_PU3_253-282
CI=1.12


[283-298 ]:
1obda_PU3_283-298
CI=0.68


Level 4
PU
Molecule needs Java 1.4 Structure


[1-57]:
1obda_PU4_1-57
CI=3.38


[58-73]:
1obda_PU4_58-73
CI=0.45


[74-110]:
1obda_PU4_74-110
CI=1.07


[111-126]:
1obda_PU4_111-126
CI=0.00


[127-147]:
1obda_PU4_127-147
CI=1.15


[148-191]:
1obda_PU4_148-191
CI=1.12


[192-252]:
1obda_PU4_192-252
CI=2.87


[253-282]:
1obda_PU4_253-282
CI=1.12


[283-298 ]:
1obda_PU4_283-298
CI=0.68


Level 5
PU
Molecule needs Java 1.4 Structure


[1-57]:
1obda_PU5_1-57
CI=3.38


[58-73]:
1obda_PU5_58-73
CI=0.45


[74-110]:
1obda_PU5_74-110
CI=1.07


[111-126]:
1obda_PU5_111-126
CI=0.00


[127-147]:
1obda_PU5_127-147
CI=1.15


[148-191]:
1obda_PU5_148-191
CI=1.12


[192-211]:
1obda_PU5_192-211
CI=0.74


[212-227]:
1obda_PU5_212-227
CI=2.33


[228-252]:
1obda_PU5_228-252
CI=1.18


[253-282]:
1obda_PU5_253-282
CI=1.12


[283-298 ]:
1obda_PU5_283-298
CI=0.68


Level 6
PU
Molecule needs Java 1.4 Structure


[1-57]:
1obda_PU6_1-57
CI=3.38


[58-73]:
1obda_PU6_58-73
CI=0.45


[74-110]:
1obda_PU6_74-110
CI=1.07


[111-126]:
1obda_PU6_111-126
CI=0.00


[127-147]:
1obda_PU6_127-147
CI=1.15


[148-169]:
1obda_PU6_148-169
CI=0.85


[170-191]:
1obda_PU6_170-191
CI=0.58


[192-211]:
1obda_PU6_192-211
CI=0.74


[212-227]:
1obda_PU6_212-227
CI=2.33


[228-252]:
1obda_PU6_228-252
CI=1.18


[253-282]:
1obda_PU6_253-282
CI=1.12


[283-298 ]:
1obda_PU6_283-298
CI=0.68


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-35]:
1obda_PU_1-35
CI=2.78


[36-57]:
1obda_PU_36-57
CI=1.62


[58-73]:
1obda_PU_58-73
CI=0.45


[74-110]:
1obda_PU_74-110
CI=1.07


[111-126]:
1obda_PU_111-126
CI=0.00


[127-147]:
1obda_PU_127-147
CI=1.15


[148-169]:
1obda_PU_148-169
CI=0.85


[170-191]:
1obda_PU_170-191
CI=0.58


[192-211]:
1obda_PU_192-211
CI=0.74


[212-227]:
1obda_PU_212-227
CI=2.33


[228-252]:
1obda_PU_228-252
CI=1.18


[253-282]:
1obda_PU_253-282
CI=1.12


[283-298 ]:
1obda_PU_283-298
CI=0.68