Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-54]:
1od3a_PU0_1-54
CI=2.85


[55-107]:
1od3a_PU0_55-107
CI=4.69


[108-131 ]:
1od3a_PU0_108-131
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1od3a_PU1_1-19
CI=0.09


[20-54]:
1od3a_PU1_20-54
CI=1.85


[55-107]:
1od3a_PU1_55-107
CI=4.69


[108-131 ]:
1od3a_PU1_108-131
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1od3a_PU2_1-19
CI=0.09


[20-38]:
1od3a_PU2_20-38
CI=1.97


[39-54]:
1od3a_PU2_39-54
CI=0.00


[55-107]:
1od3a_PU2_55-107
CI=4.69


[108-131 ]:
1od3a_PU2_108-131
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1od3a_PU3_1-19
CI=0.09


[20-38]:
1od3a_PU3_20-38
CI=1.97


[39-54]:
1od3a_PU3_39-54
CI=0.00


[55-90]:
1od3a_PU3_55-90
CI=2.60


[91-107]:
1od3a_PU3_91-107
CI=0.21


[108-131 ]:
1od3a_PU3_108-131
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1od3a_PU_1-19
CI=0.09


[20-38]:
1od3a_PU_20-38
CI=1.97


[39-54]:
1od3a_PU_39-54
CI=0.00


[55-74]:
1od3a_PU_55-74
CI=0.09


[75-90]:
1od3a_PU_75-90
CI=0.35


[91-107]:
1od3a_PU_91-107
CI=0.21


[108-131 ]:
1od3a_PU_108-131
CI=0.00