Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-319]:
1oe1a_PU0_1-319
CI=6.07


[320-335 ]:
1oe1a_PU0_320-335
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-154]:
1oe1a_PU1_1-154
CI=5.43


[155-319]:
1oe1a_PU1_155-319
CI=5.19


[320-335 ]:
1oe1a_PU1_320-335
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-154]:
1oe1a_PU2_1-154
CI=5.43


[155-176]:
1oe1a_PU2_155-176
CI=0.60


[177-207]:
1oe1a_PU2_177-207
CI=1.10


[208-319]:
1oe1a_PU2_208-319
CI=5.71


[320-335 ]:
1oe1a_PU2_320-335
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-154]:
1oe1a_PU3_1-154
CI=5.43


[155-176]:
1oe1a_PU3_155-176
CI=0.60


[177-207]:
1oe1a_PU3_177-207
CI=1.10


[208-231]:
1oe1a_PU3_208-231
CI=0.70


[232-287]:
1oe1a_PU3_232-287
CI=4.97


[288-319]:
1oe1a_PU3_288-319
CI=3.26


[320-335 ]:
1oe1a_PU3_320-335
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-39]:
1oe1a_PU4_1-39
CI=1.47


[40-56]:
1oe1a_PU4_40-56
CI=2.42


[57-154]:
1oe1a_PU4_57-154
CI=4.92


[155-176]:
1oe1a_PU4_155-176
CI=0.60


[177-207]:
1oe1a_PU4_177-207
CI=1.10


[208-231]:
1oe1a_PU4_208-231
CI=0.70


[232-287]:
1oe1a_PU4_232-287
CI=4.97


[288-319]:
1oe1a_PU4_288-319
CI=3.26


[320-335 ]:
1oe1a_PU4_320-335
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-39]:
1oe1a_PU5_1-39
CI=1.47


[40-56]:
1oe1a_PU5_40-56
CI=2.42


[57-80]:
1oe1a_PU5_57-80
CI=0.31


[81-117]:
1oe1a_PU5_81-117
CI=2.84


[118-154]:
1oe1a_PU5_118-154
CI=2.22


[155-176]:
1oe1a_PU5_155-176
CI=0.60


[177-207]:
1oe1a_PU5_177-207
CI=1.10


[208-231]:
1oe1a_PU5_208-231
CI=0.70


[232-287]:
1oe1a_PU5_232-287
CI=4.97


[288-319]:
1oe1a_PU5_288-319
CI=3.26


[320-335 ]:
1oe1a_PU5_320-335
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1oe1a_PU6_1-20
CI=0.37


[21-39]:
1oe1a_PU6_21-39
CI=0.00


[40-56]:
1oe1a_PU6_40-56
CI=2.42


[57-80]:
1oe1a_PU6_57-80
CI=0.31


[81-117]:
1oe1a_PU6_81-117
CI=2.84


[118-154]:
1oe1a_PU6_118-154
CI=2.22


[155-176]:
1oe1a_PU6_155-176
CI=0.60


[177-207]:
1oe1a_PU6_177-207
CI=1.10


[208-231]:
1oe1a_PU6_208-231
CI=0.70


[232-287]:
1oe1a_PU6_232-287
CI=4.97


[288-319]:
1oe1a_PU6_288-319
CI=3.26


[320-335 ]:
1oe1a_PU6_320-335
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1oe1a_PU7_1-20
CI=0.37


[21-39]:
1oe1a_PU7_21-39
CI=0.00


[40-56]:
1oe1a_PU7_40-56
CI=2.42


[57-80]:
1oe1a_PU7_57-80
CI=0.31


[81-117]:
1oe1a_PU7_81-117
CI=2.84


[118-154]:
1oe1a_PU7_118-154
CI=2.22


[155-176]:
1oe1a_PU7_155-176
CI=0.60


[177-207]:
1oe1a_PU7_177-207
CI=1.10


[208-231]:
1oe1a_PU7_208-231
CI=0.70


[232-252]:
1oe1a_PU7_232-252
CI=0.00


[253-287]:
1oe1a_PU7_253-287
CI=3.81


[288-319]:
1oe1a_PU7_288-319
CI=3.26


[320-335 ]:
1oe1a_PU7_320-335
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1oe1a_PU_1-20
CI=0.37


[21-39]:
1oe1a_PU_21-39
CI=0.00


[40-56]:
1oe1a_PU_40-56
CI=2.42


[57-80]:
1oe1a_PU_57-80
CI=0.31


[81-117]:
1oe1a_PU_81-117
CI=2.84


[118-154]:
1oe1a_PU_118-154
CI=2.22


[155-176]:
1oe1a_PU_155-176
CI=0.60


[177-207]:
1oe1a_PU_177-207
CI=1.10


[208-231]:
1oe1a_PU_208-231
CI=0.70


[232-252]:
1oe1a_PU_232-252
CI=0.00


[253-271]:
1oe1a_PU_253-271
CI=2.55


[272-287]:
1oe1a_PU_272-287
CI=0.22


[288-319]:
1oe1a_PU_288-319
CI=3.26


[320-335 ]:
1oe1a_PU_320-335
CI=0.00