Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-80]:
1oe8a_PU0_1-80
CI=2.95


[81-193]:
1oe8a_PU0_81-193
CI=2.11


[194-204 ]:
1oe8a_PU0_194-204
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-80]:
1oe8a_PU1_1-80
CI=2.95


[81-104]:
1oe8a_PU1_81-104
CI=0.47


[105-127]:
1oe8a_PU1_105-127
CI=0.96


[128-193]:
1oe8a_PU1_128-193
CI=1.39


[194-204 ]:
1oe8a_PU1_194-204
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1oe8a_PU2_1-32
CI=1.42


[33-49]:
1oe8a_PU2_33-49
CI=0.22


[50-80]:
1oe8a_PU2_50-80
CI=1.77


[81-104]:
1oe8a_PU2_81-104
CI=0.47


[105-127]:
1oe8a_PU2_105-127
CI=0.96


[128-193]:
1oe8a_PU2_128-193
CI=1.39


[194-204 ]:
1oe8a_PU2_194-204
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1oe8a_PU_1-32
CI=1.42


[33-49]:
1oe8a_PU_33-49
CI=0.22


[50-80]:
1oe8a_PU_50-80
CI=1.77


[81-104]:
1oe8a_PU_81-104
CI=0.47


[105-127]:
1oe8a_PU_105-127
CI=0.96


[128-152]:
1oe8a_PU_128-152
CI=0.82


[153-177]:
1oe8a_PU_153-177
CI=0.22


[178-193]:
1oe8a_PU_178-193
CI=0.00


[194-204 ]:
1oe8a_PU_194-204
CI=0.00