Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-172]:
1oewa_PU0_1-172
CI=5.78


[173-328 ]:
1oewa_PU0_173-328
CI=4.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-172]:
1oewa_PU1_1-172
CI=5.78


[173-193]:
1oewa_PU1_173-193
CI=0.18


[194-310]:
1oewa_PU1_194-310
CI=4.46


[311-328 ]:
1oewa_PU1_311-328
CI=2.60


Level 2
PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU2_1-23
CI=1.65


[24-146]:
1oewa_PU2_24-146
CI=5.17


[147-172]:
1oewa_PU2_147-172
CI=2.77


[173-193]:
1oewa_PU2_173-193
CI=0.18


[194-310]:
1oewa_PU2_194-310
CI=4.46


[311-328 ]:
1oewa_PU2_311-328
CI=2.60


Level 3
PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU3_1-23
CI=1.65


[24-146]:
1oewa_PU3_24-146
CI=5.17


[147-172]:
1oewa_PU3_147-172
CI=2.77


[173-193]:
1oewa_PU3_173-193
CI=0.18


[194-235]:
1oewa_PU3_194-235
CI=1.65


[236-291]:
1oewa_PU3_236-291
CI=3.17


[292-310]:
1oewa_PU3_292-310
CI=0.20


[311-328 ]:
1oewa_PU3_311-328
CI=2.60


Level 4
PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU4_1-23
CI=1.65


[24-146]:
1oewa_PU4_24-146
CI=5.17


[147-172]:
1oewa_PU4_147-172
CI=2.77


[173-193]:
1oewa_PU4_173-193
CI=0.18


[194-216]:
1oewa_PU4_194-216
CI=2.64


[217-235]:
1oewa_PU4_217-235
CI=0.00


[236-291]:
1oewa_PU4_236-291
CI=3.17


[292-310]:
1oewa_PU4_292-310
CI=0.20


[311-328 ]:
1oewa_PU4_311-328
CI=2.60


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU5_1-23
CI=1.65


[24-146]:
1oewa_PU5_24-146
CI=5.17


[147-172]:
1oewa_PU5_147-172
CI=2.77


[173-193]:
1oewa_PU5_173-193
CI=0.18


[194-216]:
1oewa_PU5_194-216
CI=2.64


[217-235]:
1oewa_PU5_217-235
CI=0.00


[236-252]:
1oewa_PU5_236-252
CI=1.76


[253-291]:
1oewa_PU5_253-291
CI=2.80


[292-310]:
1oewa_PU5_292-310
CI=0.20


[311-328 ]:
1oewa_PU5_311-328
CI=2.60


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU6_1-23
CI=1.65


[24-146]:
1oewa_PU6_24-146
CI=5.17


[147-172]:
1oewa_PU6_147-172
CI=2.77


[173-193]:
1oewa_PU6_173-193
CI=0.18


[194-216]:
1oewa_PU6_194-216
CI=2.64


[217-235]:
1oewa_PU6_217-235
CI=0.00


[236-252]:
1oewa_PU6_236-252
CI=1.76


[253-272]:
1oewa_PU6_253-272
CI=1.59


[273-291]:
1oewa_PU6_273-291
CI=1.98


[292-310]:
1oewa_PU6_292-310
CI=0.20


[311-328 ]:
1oewa_PU6_311-328
CI=2.60


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU7_1-23
CI=1.65


[24-43]:
1oewa_PU7_24-43
CI=0.09


[44-118]:
1oewa_PU7_44-118
CI=3.77


[119-146]:
1oewa_PU7_119-146
CI=1.68


[147-172]:
1oewa_PU7_147-172
CI=2.77


[173-193]:
1oewa_PU7_173-193
CI=0.18


[194-216]:
1oewa_PU7_194-216
CI=2.64


[217-235]:
1oewa_PU7_217-235
CI=0.00


[236-252]:
1oewa_PU7_236-252
CI=1.76


[253-272]:
1oewa_PU7_253-272
CI=1.59


[273-291]:
1oewa_PU7_273-291
CI=1.98


[292-310]:
1oewa_PU7_292-310
CI=0.20


[311-328 ]:
1oewa_PU7_311-328
CI=2.60


Level 8
PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU8_1-23
CI=1.65


[24-43]:
1oewa_PU8_24-43
CI=0.09


[44-62]:
1oewa_PU8_44-62
CI=1.36


[63-106]:
1oewa_PU8_63-106
CI=3.45


[107-118]:
1oewa_PU8_107-118
CI=0.00


[119-146]:
1oewa_PU8_119-146
CI=1.68


[147-172]:
1oewa_PU8_147-172
CI=2.77


[173-193]:
1oewa_PU8_173-193
CI=0.18


[194-216]:
1oewa_PU8_194-216
CI=2.64


[217-235]:
1oewa_PU8_217-235
CI=0.00


[236-252]:
1oewa_PU8_236-252
CI=1.76


[253-272]:
1oewa_PU8_253-272
CI=1.59


[273-291]:
1oewa_PU8_273-291
CI=1.98


[292-310]:
1oewa_PU8_292-310
CI=0.20


[311-328 ]:
1oewa_PU8_311-328
CI=2.60


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-23]:
1oewa_PU_1-23
CI=1.65


[24-43]:
1oewa_PU_24-43
CI=0.09


[44-62]:
1oewa_PU_44-62
CI=1.36


[63-88]:
1oewa_PU_63-88
CI=1.98


[89-106]:
1oewa_PU_89-106
CI=2.47


[107-118]:
1oewa_PU_107-118
CI=0.00


[119-146]:
1oewa_PU_119-146
CI=1.68


[147-172]:
1oewa_PU_147-172
CI=2.77


[173-193]:
1oewa_PU_173-193
CI=0.18


[194-216]:
1oewa_PU_194-216
CI=2.64


[217-235]:
1oewa_PU_217-235
CI=0.00


[236-252]:
1oewa_PU_236-252
CI=1.76


[253-272]:
1oewa_PU_253-272
CI=1.59


[273-291]:
1oewa_PU_273-291
CI=1.98


[292-310]:
1oewa_PU_292-310
CI=0.20


[311-328 ]:
1oewa_PU_311-328
CI=2.60