Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1oeya_PU0_1-24
CI=1.73


[25-42]:
1oeya_PU0_25-42
CI=1.11


[43-78 ]:
1oeya_PU0_43-78
CI=2.43


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-24]:
1oeya_PU_1-24
CI=1.73


[25-42]:
1oeya_PU_25-42
CI=1.11


[43-62]:
1oeya_PU_43-62
CI=1.87


[63-78 ]:
1oeya_PU_63-78
CI=0.68