Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-155]:
1of8a_PU0_1-155
CI=3.66


[156-252]:
1of8a_PU0_156-252
CI=4.15


[253-339 ]:
1of8a_PU0_253-339
CI=3.74


Level 1
PU
Molecule needs Java 1.4 Structure


[1-155]:
1of8a_PU1_1-155
CI=3.66


[156-199]:
1of8a_PU1_156-199
CI=2.83


[200-215]:
1of8a_PU1_200-215
CI=2.77


[216-252]:
1of8a_PU1_216-252
CI=0.76


[253-339 ]:
1of8a_PU1_253-339
CI=3.74


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU2_1-20
CI=0.00


[21-155]:
1of8a_PU2_21-155
CI=3.99


[156-199]:
1of8a_PU2_156-199
CI=2.83


[200-215]:
1of8a_PU2_200-215
CI=2.77


[216-252]:
1of8a_PU2_216-252
CI=0.76


[253-339 ]:
1of8a_PU2_253-339
CI=3.74


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU3_1-20
CI=0.00


[21-89]:
1of8a_PU3_21-89
CI=2.03


[90-118]:
1of8a_PU3_90-118
CI=2.28


[119-155]:
1of8a_PU3_119-155
CI=1.90


[156-199]:
1of8a_PU3_156-199
CI=2.83


[200-215]:
1of8a_PU3_200-215
CI=2.77


[216-252]:
1of8a_PU3_216-252
CI=0.76


[253-339 ]:
1of8a_PU3_253-339
CI=3.74


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU4_1-20
CI=0.00


[21-45]:
1of8a_PU4_21-45
CI=0.37


[46-89]:
1of8a_PU4_46-89
CI=2.22


[90-118]:
1of8a_PU4_90-118
CI=2.28


[119-155]:
1of8a_PU4_119-155
CI=1.90


[156-199]:
1of8a_PU4_156-199
CI=2.83


[200-215]:
1of8a_PU4_200-215
CI=2.77


[216-252]:
1of8a_PU4_216-252
CI=0.76


[253-339 ]:
1of8a_PU4_253-339
CI=3.74


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU5_1-20
CI=0.00


[21-45]:
1of8a_PU5_21-45
CI=0.37


[46-89]:
1of8a_PU5_46-89
CI=2.22


[90-118]:
1of8a_PU5_90-118
CI=2.28


[119-155]:
1of8a_PU5_119-155
CI=1.90


[156-199]:
1of8a_PU5_156-199
CI=2.83


[200-215]:
1of8a_PU5_200-215
CI=2.77


[216-252]:
1of8a_PU5_216-252
CI=0.76


[253-295]:
1of8a_PU5_253-295
CI=2.56


[296-319]:
1of8a_PU5_296-319
CI=3.84


[320-339 ]:
1of8a_PU5_320-339
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU6_1-20
CI=0.00


[21-45]:
1of8a_PU6_21-45
CI=0.37


[46-89]:
1of8a_PU6_46-89
CI=2.22


[90-118]:
1of8a_PU6_90-118
CI=2.28


[119-155]:
1of8a_PU6_119-155
CI=1.90


[156-199]:
1of8a_PU6_156-199
CI=2.83


[200-215]:
1of8a_PU6_200-215
CI=2.77


[216-235]:
1of8a_PU6_216-235
CI=0.64


[236-252]:
1of8a_PU6_236-252
CI=0.10


[253-295]:
1of8a_PU6_253-295
CI=2.56


[296-319]:
1of8a_PU6_296-319
CI=3.84


[320-339 ]:
1of8a_PU6_320-339
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU7_1-20
CI=0.00


[21-45]:
1of8a_PU7_21-45
CI=0.37


[46-89]:
1of8a_PU7_46-89
CI=2.22


[90-118]:
1of8a_PU7_90-118
CI=2.28


[119-135]:
1of8a_PU7_119-135
CI=0.31


[136-155]:
1of8a_PU7_136-155
CI=0.85


[156-199]:
1of8a_PU7_156-199
CI=2.83


[200-215]:
1of8a_PU7_200-215
CI=2.77


[216-235]:
1of8a_PU7_216-235
CI=0.64


[236-252]:
1of8a_PU7_236-252
CI=0.10


[253-295]:
1of8a_PU7_253-295
CI=2.56


[296-319]:
1of8a_PU7_296-319
CI=3.84


[320-339 ]:
1of8a_PU7_320-339
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU8_1-20
CI=0.00


[21-45]:
1of8a_PU8_21-45
CI=0.37


[46-89]:
1of8a_PU8_46-89
CI=2.22


[90-118]:
1of8a_PU8_90-118
CI=2.28


[119-135]:
1of8a_PU8_119-135
CI=0.31


[136-155]:
1of8a_PU8_136-155
CI=0.85


[156-199]:
1of8a_PU8_156-199
CI=2.83


[200-215]:
1of8a_PU8_200-215
CI=2.77


[216-235]:
1of8a_PU8_216-235
CI=0.64


[236-252]:
1of8a_PU8_236-252
CI=0.10


[253-275]:
1of8a_PU8_253-275
CI=1.60


[276-295]:
1of8a_PU8_276-295
CI=0.18


[296-319]:
1of8a_PU8_296-319
CI=3.84


[320-339 ]:
1of8a_PU8_320-339
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU9_1-20
CI=0.00


[21-45]:
1of8a_PU9_21-45
CI=0.37


[46-89]:
1of8a_PU9_46-89
CI=2.22


[90-118]:
1of8a_PU9_90-118
CI=2.28


[119-135]:
1of8a_PU9_119-135
CI=0.31


[136-155]:
1of8a_PU9_136-155
CI=0.85


[156-179]:
1of8a_PU9_156-179
CI=1.10


[180-199]:
1of8a_PU9_180-199
CI=0.74


[200-215]:
1of8a_PU9_200-215
CI=2.77


[216-235]:
1of8a_PU9_216-235
CI=0.64


[236-252]:
1of8a_PU9_236-252
CI=0.10


[253-275]:
1of8a_PU9_253-275
CI=1.60


[276-295]:
1of8a_PU9_276-295
CI=0.18


[296-319]:
1of8a_PU9_296-319
CI=3.84


[320-339 ]:
1of8a_PU9_320-339
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-20]:
1of8a_PU_1-20
CI=0.00


[21-45]:
1of8a_PU_21-45
CI=0.37


[46-68]:
1of8a_PU_46-68
CI=0.16


[69-89]:
1of8a_PU_69-89
CI=0.35


[90-118]:
1of8a_PU_90-118
CI=2.28


[119-135]:
1of8a_PU_119-135
CI=0.31


[136-155]:
1of8a_PU_136-155
CI=0.85


[156-179]:
1of8a_PU_156-179
CI=1.10


[180-199]:
1of8a_PU_180-199
CI=0.74


[200-215]:
1of8a_PU_200-215
CI=2.77


[216-235]:
1of8a_PU_216-235
CI=0.64


[236-252]:
1of8a_PU_236-252
CI=0.10


[253-275]:
1of8a_PU_253-275
CI=1.60


[276-295]:
1of8a_PU_276-295
CI=0.18


[296-319]:
1of8a_PU_296-319
CI=3.84


[320-339 ]:
1of8a_PU_320-339
CI=0.00