Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ofza_PU0_1-56
CI=3.73


[57-211]:
1ofza_PU0_57-211
CI=5.73


[212-312 ]:
1ofza_PU0_212-312
CI=4.73


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ofza_PU1_1-56
CI=3.73


[57-108]:
1ofza_PU1_57-108
CI=4.25


[109-211]:
1ofza_PU1_109-211
CI=5.41


[212-312 ]:
1ofza_PU1_212-312
CI=4.73


Level 2
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ofza_PU2_1-56
CI=3.73


[57-108]:
1ofza_PU2_57-108
CI=4.25


[109-211]:
1ofza_PU2_109-211
CI=5.41


[212-281]:
1ofza_PU2_212-281
CI=4.87


[282-312 ]:
1ofza_PU2_282-312
CI=1.84


Level 3
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ofza_PU3_1-56
CI=3.73


[57-108]:
1ofza_PU3_57-108
CI=4.25


[109-158]:
1ofza_PU3_109-158
CI=3.67


[159-211]:
1ofza_PU3_159-211
CI=4.31


[212-281]:
1ofza_PU3_212-281
CI=4.87


[282-312 ]:
1ofza_PU3_282-312
CI=1.84


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ofza_PU4_1-56
CI=3.73


[57-108]:
1ofza_PU4_57-108
CI=4.25


[109-158]:
1ofza_PU4_109-158
CI=3.67


[159-211]:
1ofza_PU4_159-211
CI=4.31


[212-230]:
1ofza_PU4_212-230
CI=2.37


[231-264]:
1ofza_PU4_231-264
CI=3.02


[265-281]:
1ofza_PU4_265-281
CI=2.30


[282-312 ]:
1ofza_PU4_282-312
CI=1.84


Level 5
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ofza_PU5_1-56
CI=3.73


[57-108]:
1ofza_PU5_57-108
CI=4.25


[109-134]:
1ofza_PU5_109-134
CI=2.27


[135-158]:
1ofza_PU5_135-158
CI=1.89


[159-211]:
1ofza_PU5_159-211
CI=4.31


[212-230]:
1ofza_PU5_212-230
CI=2.37


[231-264]:
1ofza_PU5_231-264
CI=3.02


[265-281]:
1ofza_PU5_265-281
CI=2.30


[282-312 ]:
1ofza_PU5_282-312
CI=1.84


Level 6
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ofza_PU6_1-56
CI=3.73


[57-80]:
1ofza_PU6_57-80
CI=2.21


[81-108]:
1ofza_PU6_81-108
CI=2.71


[109-134]:
1ofza_PU6_109-134
CI=2.27


[135-158]:
1ofza_PU6_135-158
CI=1.89


[159-211]:
1ofza_PU6_159-211
CI=4.31


[212-230]:
1ofza_PU6_212-230
CI=2.37


[231-264]:
1ofza_PU6_231-264
CI=3.02


[265-281]:
1ofza_PU6_265-281
CI=2.30


[282-312 ]:
1ofza_PU6_282-312
CI=1.84


Level 7
PU
Molecule needs Java 1.4 Structure


[1-30]:
1ofza_PU7_1-30
CI=2.35


[31-56]:
1ofza_PU7_31-56
CI=2.49


[57-80]:
1ofza_PU7_57-80
CI=2.21


[81-108]:
1ofza_PU7_81-108
CI=2.71


[109-134]:
1ofza_PU7_109-134
CI=2.27


[135-158]:
1ofza_PU7_135-158
CI=1.89


[159-211]:
1ofza_PU7_159-211
CI=4.31


[212-230]:
1ofza_PU7_212-230
CI=2.37


[231-264]:
1ofza_PU7_231-264
CI=3.02


[265-281]:
1ofza_PU7_265-281
CI=2.30


[282-312 ]:
1ofza_PU7_282-312
CI=1.84


Level 8
PU
Molecule needs Java 1.4 Structure


[1-30]:
1ofza_PU8_1-30
CI=2.35


[31-56]:
1ofza_PU8_31-56
CI=2.49


[57-80]:
1ofza_PU8_57-80
CI=2.21


[81-108]:
1ofza_PU8_81-108
CI=2.71


[109-134]:
1ofza_PU8_109-134
CI=2.27


[135-158]:
1ofza_PU8_135-158
CI=1.89


[159-186]:
1ofza_PU8_159-186
CI=2.76


[187-211]:
1ofza_PU8_187-211
CI=2.51


[212-230]:
1ofza_PU8_212-230
CI=2.37


[231-264]:
1ofza_PU8_231-264
CI=3.02


[265-281]:
1ofza_PU8_265-281
CI=2.30


[282-312 ]:
1ofza_PU8_282-312
CI=1.84


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-30]:
1ofza_PU_1-30
CI=2.35


[31-56]:
1ofza_PU_31-56
CI=2.49


[57-80]:
1ofza_PU_57-80
CI=2.21


[81-108]:
1ofza_PU_81-108
CI=2.71


[109-134]:
1ofza_PU_109-134
CI=2.27


[135-158]:
1ofza_PU_135-158
CI=1.89


[159-186]:
1ofza_PU_159-186
CI=2.76


[187-211]:
1ofza_PU_187-211
CI=2.51


[212-230]:
1ofza_PU_212-230
CI=2.37


[231-247]:
1ofza_PU_231-247
CI=0.54


[248-264]:
1ofza_PU_248-264
CI=0.10


[265-281]:
1ofza_PU_265-281
CI=2.30


[282-312 ]:
1ofza_PU_282-312
CI=1.84