Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogda_PU0_1-17
CI=0.22


[18-131 ]:
1ogda_PU0_18-131
CI=4.62


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogda_PU1_1-17
CI=0.22


[18-62]:
1ogda_PU1_18-62
CI=0.59


[63-104]:
1ogda_PU1_63-104
CI=1.92


[105-131 ]:
1ogda_PU1_105-131
CI=0.06


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogda_PU2_1-17
CI=0.22


[18-41]:
1ogda_PU2_18-41
CI=0.08


[42-62]:
1ogda_PU2_42-62
CI=0.35


[63-104]:
1ogda_PU2_63-104
CI=1.92


[105-131 ]:
1ogda_PU2_105-131
CI=0.06


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogda_PU_1-17
CI=0.22


[18-41]:
1ogda_PU_18-41
CI=0.08


[42-62]:
1ogda_PU_42-62
CI=0.35


[63-88]:
1ogda_PU_63-88
CI=0.29


[89-104]:
1ogda_PU_89-104
CI=0.11


[105-131 ]:
1ogda_PU_105-131
CI=0.06