Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogwa_PU0_1-17
CI=2.52


[18-60]:
1ogwa_PU0_18-60
CI=2.30


[61-74 ]:
1ogwa_PU0_61-74
CI=0.12


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ogwa_PU_1-17
CI=2.52


[18-42]:
1ogwa_PU_18-42
CI=1.11


[43-60]:
1ogwa_PU_43-60
CI=0.20


[61-74 ]:
1ogwa_PU_61-74
CI=0.12