Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU0_1-17
CI=0.00


[18-340 ]:
1ohla_PU0_18-340
CI=4.18


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU1_1-17
CI=0.00


[18-35]:
1ohla_PU1_18-35
CI=0.51


[36-340 ]:
1ohla_PU1_36-340
CI=4.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU2_1-17
CI=0.00


[18-35]:
1ohla_PU2_18-35
CI=0.51


[36-83]:
1ohla_PU2_36-83
CI=2.16


[84-257]:
1ohla_PU2_84-257
CI=3.66


[258-340 ]:
1ohla_PU2_258-340
CI=2.77


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU3_1-17
CI=0.00


[18-35]:
1ohla_PU3_18-35
CI=0.51


[36-83]:
1ohla_PU3_36-83
CI=2.16


[84-257]:
1ohla_PU3_84-257
CI=3.66


[258-293]:
1ohla_PU3_258-293
CI=2.42


[294-311]:
1ohla_PU3_294-311
CI=1.22


[312-340 ]:
1ohla_PU3_312-340
CI=0.19


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU4_1-17
CI=0.00


[18-35]:
1ohla_PU4_18-35
CI=0.51


[36-83]:
1ohla_PU4_36-83
CI=2.16


[84-210]:
1ohla_PU4_84-210
CI=3.89


[211-257]:
1ohla_PU4_211-257
CI=0.66


[258-293]:
1ohla_PU4_258-293
CI=2.42


[294-311]:
1ohla_PU4_294-311
CI=1.22


[312-340 ]:
1ohla_PU4_312-340
CI=0.19


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU5_1-17
CI=0.00


[18-35]:
1ohla_PU5_18-35
CI=0.51


[36-83]:
1ohla_PU5_36-83
CI=2.16


[84-210]:
1ohla_PU5_84-210
CI=3.89


[211-239]:
1ohla_PU5_211-239
CI=0.92


[240-257]:
1ohla_PU5_240-257
CI=0.00


[258-293]:
1ohla_PU5_258-293
CI=2.42


[294-311]:
1ohla_PU5_294-311
CI=1.22


[312-340 ]:
1ohla_PU5_312-340
CI=0.19


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU6_1-17
CI=0.00


[18-35]:
1ohla_PU6_18-35
CI=0.51


[36-83]:
1ohla_PU6_36-83
CI=2.16


[84-143]:
1ohla_PU6_84-143
CI=2.77


[144-210]:
1ohla_PU6_144-210
CI=2.79


[211-239]:
1ohla_PU6_211-239
CI=0.92


[240-257]:
1ohla_PU6_240-257
CI=0.00


[258-293]:
1ohla_PU6_258-293
CI=2.42


[294-311]:
1ohla_PU6_294-311
CI=1.22


[312-340 ]:
1ohla_PU6_312-340
CI=0.19


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU7_1-17
CI=0.00


[18-35]:
1ohla_PU7_18-35
CI=0.51


[36-83]:
1ohla_PU7_36-83
CI=2.16


[84-143]:
1ohla_PU7_84-143
CI=2.77


[144-160]:
1ohla_PU7_144-160
CI=1.84


[161-210]:
1ohla_PU7_161-210
CI=2.50


[211-239]:
1ohla_PU7_211-239
CI=0.92


[240-257]:
1ohla_PU7_240-257
CI=0.00


[258-293]:
1ohla_PU7_258-293
CI=2.42


[294-311]:
1ohla_PU7_294-311
CI=1.22


[312-340 ]:
1ohla_PU7_312-340
CI=0.19


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU8_1-17
CI=0.00


[18-35]:
1ohla_PU8_18-35
CI=0.51


[36-67]:
1ohla_PU8_36-67
CI=2.09


[68-83]:
1ohla_PU8_68-83
CI=0.00


[84-143]:
1ohla_PU8_84-143
CI=2.77


[144-160]:
1ohla_PU8_144-160
CI=1.84


[161-210]:
1ohla_PU8_161-210
CI=2.50


[211-239]:
1ohla_PU8_211-239
CI=0.92


[240-257]:
1ohla_PU8_240-257
CI=0.00


[258-293]:
1ohla_PU8_258-293
CI=2.42


[294-311]:
1ohla_PU8_294-311
CI=1.22


[312-340 ]:
1ohla_PU8_312-340
CI=0.19


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ohla_PU_1-17
CI=0.00


[18-35]:
1ohla_PU_18-35
CI=0.51


[36-67]:
1ohla_PU_36-67
CI=2.09


[68-83]:
1ohla_PU_68-83
CI=0.00


[84-101]:
1ohla_PU_84-101
CI=0.10


[102-125]:
1ohla_PU_102-125
CI=0.46


[126-143]:
1ohla_PU_126-143
CI=0.82


[144-160]:
1ohla_PU_144-160
CI=1.84


[161-210]:
1ohla_PU_161-210
CI=2.50


[211-239]:
1ohla_PU_211-239
CI=0.92


[240-257]:
1ohla_PU_240-257
CI=0.00


[258-293]:
1ohla_PU_258-293
CI=2.42


[294-311]:
1ohla_PU_294-311
CI=1.22


[312-340 ]:
1ohla_PU_312-340
CI=0.19