Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1oi0a_PU0_1-50
CI=2.42


[51-100]:
1oi0a_PU0_51-100
CI=4.18


[101-108 ]:
1oi0a_PU0_101-108
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1oi0a_PU1_1-25
CI=0.14


[26-50]:
1oi0a_PU1_26-50
CI=2.65


[51-100]:
1oi0a_PU1_51-100
CI=4.18


[101-108 ]:
1oi0a_PU1_101-108
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1oi0a_PU_1-25
CI=0.14


[26-50]:
1oi0a_PU_26-50
CI=2.65


[51-79]:
1oi0a_PU_51-79
CI=0.90


[80-100]:
1oi0a_PU_80-100
CI=2.24


[101-108 ]:
1oi0a_PU_101-108
CI=0.00