Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-172]:
1oi2a_PU0_1-172
CI=4.93


[173-316]:
1oi2a_PU0_173-316
CI=4.51


[317-336 ]:
1oi2a_PU0_317-336
CI=1.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-172]:
1oi2a_PU1_1-172
CI=4.93


[173-227]:
1oi2a_PU1_173-227
CI=2.24


[228-249]:
1oi2a_PU1_228-249
CI=2.68


[250-316]:
1oi2a_PU1_250-316
CI=4.01


[317-336 ]:
1oi2a_PU1_317-336
CI=1.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU2_1-19
CI=0.49


[20-172]:
1oi2a_PU2_20-172
CI=5.24


[173-227]:
1oi2a_PU2_173-227
CI=2.24


[228-249]:
1oi2a_PU2_228-249
CI=2.68


[250-316]:
1oi2a_PU2_250-316
CI=4.01


[317-336 ]:
1oi2a_PU2_317-336
CI=1.30


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU3_1-19
CI=0.49


[20-172]:
1oi2a_PU3_20-172
CI=5.24


[173-208]:
1oi2a_PU3_173-208
CI=2.87


[209-227]:
1oi2a_PU3_209-227
CI=0.00


[228-249]:
1oi2a_PU3_228-249
CI=2.68


[250-316]:
1oi2a_PU3_250-316
CI=4.01


[317-336 ]:
1oi2a_PU3_317-336
CI=1.30


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU4_1-19
CI=0.49


[20-123]:
1oi2a_PU4_20-123
CI=4.88


[124-139]:
1oi2a_PU4_124-139
CI=1.96


[140-172]:
1oi2a_PU4_140-172
CI=1.09


[173-208]:
1oi2a_PU4_173-208
CI=2.87


[209-227]:
1oi2a_PU4_209-227
CI=0.00


[228-249]:
1oi2a_PU4_228-249
CI=2.68


[250-316]:
1oi2a_PU4_250-316
CI=4.01


[317-336 ]:
1oi2a_PU4_317-336
CI=1.30


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU5_1-19
CI=0.49


[20-88]:
1oi2a_PU5_20-88
CI=4.58


[89-123]:
1oi2a_PU5_89-123
CI=2.29


[124-139]:
1oi2a_PU5_124-139
CI=1.96


[140-172]:
1oi2a_PU5_140-172
CI=1.09


[173-208]:
1oi2a_PU5_173-208
CI=2.87


[209-227]:
1oi2a_PU5_209-227
CI=0.00


[228-249]:
1oi2a_PU5_228-249
CI=2.68


[250-316]:
1oi2a_PU5_250-316
CI=4.01


[317-336 ]:
1oi2a_PU5_317-336
CI=1.30


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU6_1-19
CI=0.49


[20-88]:
1oi2a_PU6_20-88
CI=4.58


[89-123]:
1oi2a_PU6_89-123
CI=2.29


[124-139]:
1oi2a_PU6_124-139
CI=1.96


[140-172]:
1oi2a_PU6_140-172
CI=1.09


[173-208]:
1oi2a_PU6_173-208
CI=2.87


[209-227]:
1oi2a_PU6_209-227
CI=0.00


[228-249]:
1oi2a_PU6_228-249
CI=2.68


[250-268]:
1oi2a_PU6_250-268
CI=0.00


[269-288]:
1oi2a_PU6_269-288
CI=0.00


[289-316]:
1oi2a_PU6_289-316
CI=0.06


[317-336 ]:
1oi2a_PU6_317-336
CI=1.30


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU7_1-19
CI=0.49


[20-36]:
1oi2a_PU7_20-36
CI=0.11


[37-72]:
1oi2a_PU7_37-72
CI=3.73


[73-88]:
1oi2a_PU7_73-88
CI=0.00


[89-123]:
1oi2a_PU7_89-123
CI=2.29


[124-139]:
1oi2a_PU7_124-139
CI=1.96


[140-172]:
1oi2a_PU7_140-172
CI=1.09


[173-208]:
1oi2a_PU7_173-208
CI=2.87


[209-227]:
1oi2a_PU7_209-227
CI=0.00


[228-249]:
1oi2a_PU7_228-249
CI=2.68


[250-268]:
1oi2a_PU7_250-268
CI=0.00


[269-288]:
1oi2a_PU7_269-288
CI=0.00


[289-316]:
1oi2a_PU7_289-316
CI=0.06


[317-336 ]:
1oi2a_PU7_317-336
CI=1.30


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU8_1-19
CI=0.49


[20-36]:
1oi2a_PU8_20-36
CI=0.11


[37-72]:
1oi2a_PU8_37-72
CI=3.73


[73-88]:
1oi2a_PU8_73-88
CI=0.00


[89-123]:
1oi2a_PU8_89-123
CI=2.29


[124-139]:
1oi2a_PU8_124-139
CI=1.96


[140-156]:
1oi2a_PU8_140-156
CI=0.00


[157-172]:
1oi2a_PU8_157-172
CI=0.00


[173-208]:
1oi2a_PU8_173-208
CI=2.87


[209-227]:
1oi2a_PU8_209-227
CI=0.00


[228-249]:
1oi2a_PU8_228-249
CI=2.68


[250-268]:
1oi2a_PU8_250-268
CI=0.00


[269-288]:
1oi2a_PU8_269-288
CI=0.00


[289-316]:
1oi2a_PU8_289-316
CI=0.06


[317-336 ]:
1oi2a_PU8_317-336
CI=1.30


Level 9
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU9_1-19
CI=0.49


[20-36]:
1oi2a_PU9_20-36
CI=0.11


[37-72]:
1oi2a_PU9_37-72
CI=3.73


[73-88]:
1oi2a_PU9_73-88
CI=0.00


[89-106]:
1oi2a_PU9_89-106
CI=0.51


[107-123]:
1oi2a_PU9_107-123
CI=0.65


[124-139]:
1oi2a_PU9_124-139
CI=1.96


[140-156]:
1oi2a_PU9_140-156
CI=0.00


[157-172]:
1oi2a_PU9_157-172
CI=0.00


[173-208]:
1oi2a_PU9_173-208
CI=2.87


[209-227]:
1oi2a_PU9_209-227
CI=0.00


[228-249]:
1oi2a_PU9_228-249
CI=2.68


[250-268]:
1oi2a_PU9_250-268
CI=0.00


[269-288]:
1oi2a_PU9_269-288
CI=0.00


[289-316]:
1oi2a_PU9_289-316
CI=0.06


[317-336 ]:
1oi2a_PU9_317-336
CI=1.30


Level 10
PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU10_1-19
CI=0.49


[20-36]:
1oi2a_PU10_20-36
CI=0.11


[37-72]:
1oi2a_PU10_37-72
CI=3.73


[73-88]:
1oi2a_PU10_73-88
CI=0.00


[89-106]:
1oi2a_PU10_89-106
CI=0.51


[107-123]:
1oi2a_PU10_107-123
CI=0.65


[124-139]:
1oi2a_PU10_124-139
CI=1.96


[140-156]:
1oi2a_PU10_140-156
CI=0.00


[157-172]:
1oi2a_PU10_157-172
CI=0.00


[173-189]:
1oi2a_PU10_173-189
CI=0.00


[190-208]:
1oi2a_PU10_190-208
CI=2.76


[209-227]:
1oi2a_PU10_209-227
CI=0.00


[228-249]:
1oi2a_PU10_228-249
CI=2.68


[250-268]:
1oi2a_PU10_250-268
CI=0.00


[269-288]:
1oi2a_PU10_269-288
CI=0.00


[289-316]:
1oi2a_PU10_289-316
CI=0.06


[317-336 ]:
1oi2a_PU10_317-336
CI=1.30


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-19]:
1oi2a_PU_1-19
CI=0.49


[20-36]:
1oi2a_PU_20-36
CI=0.11


[37-54]:
1oi2a_PU_37-54
CI=0.31


[55-72]:
1oi2a_PU_55-72
CI=0.84


[73-88]:
1oi2a_PU_73-88
CI=0.00


[89-106]:
1oi2a_PU_89-106
CI=0.51


[107-123]:
1oi2a_PU_107-123
CI=0.65


[124-139]:
1oi2a_PU_124-139
CI=1.96


[140-156]:
1oi2a_PU_140-156
CI=0.00


[157-172]:
1oi2a_PU_157-172
CI=0.00


[173-189]:
1oi2a_PU_173-189
CI=0.00


[190-208]:
1oi2a_PU_190-208
CI=2.76


[209-227]:
1oi2a_PU_209-227
CI=0.00


[228-249]:
1oi2a_PU_228-249
CI=2.68


[250-268]:
1oi2a_PU_250-268
CI=0.00


[269-288]:
1oi2a_PU_269-288
CI=0.00


[289-316]:
1oi2a_PU_289-316
CI=0.06


[317-336 ]:
1oi2a_PU_317-336
CI=1.30