Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-140]:
1oi7a_PU0_1-140
CI=5.10


[141-270 ]:
1oi7a_PU0_141-270
CI=4.35


Level 1
PU
Molecule needs Java 1.4 Structure


[1-70]:
1oi7a_PU1_1-70
CI=4.12


[71-123]:
1oi7a_PU1_71-123
CI=3.50


[124-140]:
1oi7a_PU1_124-140
CI=2.38


[141-270 ]:
1oi7a_PU1_141-270
CI=4.35


Level 2
PU
Molecule needs Java 1.4 Structure


[1-70]:
1oi7a_PU2_1-70
CI=4.12


[71-123]:
1oi7a_PU2_71-123
CI=3.50


[124-140]:
1oi7a_PU2_124-140
CI=2.38


[141-206]:
1oi7a_PU2_141-206
CI=3.85


[207-270 ]:
1oi7a_PU2_207-270
CI=2.79


Level 3
PU
Molecule needs Java 1.4 Structure


[1-70]:
1oi7a_PU3_1-70
CI=4.12


[71-123]:
1oi7a_PU3_71-123
CI=3.50


[124-140]:
1oi7a_PU3_124-140
CI=2.38


[141-206]:
1oi7a_PU3_141-206
CI=3.85


[207-254]:
1oi7a_PU3_207-254
CI=2.95


[255-270 ]:
1oi7a_PU3_255-270
CI=0.22


Level 4
PU
Molecule needs Java 1.4 Structure


[1-70]:
1oi7a_PU4_1-70
CI=4.12


[71-123]:
1oi7a_PU4_71-123
CI=3.50


[124-140]:
1oi7a_PU4_124-140
CI=2.38


[141-179]:
1oi7a_PU4_141-179
CI=4.01


[180-206]:
1oi7a_PU4_180-206
CI=0.41


[207-254]:
1oi7a_PU4_207-254
CI=2.95


[255-270 ]:
1oi7a_PU4_255-270
CI=0.22


Level 5
PU
Molecule needs Java 1.4 Structure


[1-37]:
1oi7a_PU5_1-37
CI=2.04


[38-70]:
1oi7a_PU5_38-70
CI=1.96


[71-123]:
1oi7a_PU5_71-123
CI=3.50


[124-140]:
1oi7a_PU5_124-140
CI=2.38


[141-179]:
1oi7a_PU5_141-179
CI=4.01


[180-206]:
1oi7a_PU5_180-206
CI=0.41


[207-254]:
1oi7a_PU5_207-254
CI=2.95


[255-270 ]:
1oi7a_PU5_255-270
CI=0.22


Level 6
PU
Molecule needs Java 1.4 Structure


[1-37]:
1oi7a_PU6_1-37
CI=2.04


[38-54]:
1oi7a_PU6_38-54
CI=2.63


[55-70]:
1oi7a_PU6_55-70
CI=0.11


[71-123]:
1oi7a_PU6_71-123
CI=3.50


[124-140]:
1oi7a_PU6_124-140
CI=2.38


[141-179]:
1oi7a_PU6_141-179
CI=4.01


[180-206]:
1oi7a_PU6_180-206
CI=0.41


[207-254]:
1oi7a_PU6_207-254
CI=2.95


[255-270 ]:
1oi7a_PU6_255-270
CI=0.22


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1oi7a_PU7_1-21
CI=0.36


[22-37]:
1oi7a_PU7_22-37
CI=0.67


[38-54]:
1oi7a_PU7_38-54
CI=2.63


[55-70]:
1oi7a_PU7_55-70
CI=0.11


[71-123]:
1oi7a_PU7_71-123
CI=3.50


[124-140]:
1oi7a_PU7_124-140
CI=2.38


[141-179]:
1oi7a_PU7_141-179
CI=4.01


[180-206]:
1oi7a_PU7_180-206
CI=0.41


[207-254]:
1oi7a_PU7_207-254
CI=2.95


[255-270 ]:
1oi7a_PU7_255-270
CI=0.22


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1oi7a_PU8_1-21
CI=0.36


[22-37]:
1oi7a_PU8_22-37
CI=0.67


[38-54]:
1oi7a_PU8_38-54
CI=2.63


[55-70]:
1oi7a_PU8_55-70
CI=0.11


[71-99]:
1oi7a_PU8_71-99
CI=1.93


[100-123]:
1oi7a_PU8_100-123
CI=0.47


[124-140]:
1oi7a_PU8_124-140
CI=2.38


[141-179]:
1oi7a_PU8_141-179
CI=4.01


[180-206]:
1oi7a_PU8_180-206
CI=0.41


[207-254]:
1oi7a_PU8_207-254
CI=2.95


[255-270 ]:
1oi7a_PU8_255-270
CI=0.22


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1oi7a_PU9_1-21
CI=0.36


[22-37]:
1oi7a_PU9_22-37
CI=0.67


[38-54]:
1oi7a_PU9_38-54
CI=2.63


[55-70]:
1oi7a_PU9_55-70
CI=0.11


[71-99]:
1oi7a_PU9_71-99
CI=1.93


[100-123]:
1oi7a_PU9_100-123
CI=0.47


[124-140]:
1oi7a_PU9_124-140
CI=2.38


[141-179]:
1oi7a_PU9_141-179
CI=4.01


[180-206]:
1oi7a_PU9_180-206
CI=0.41


[207-227]:
1oi7a_PU9_207-227
CI=0.17


[228-254]:
1oi7a_PU9_228-254
CI=1.61


[255-270 ]:
1oi7a_PU9_255-270
CI=0.22


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1oi7a_PU_1-21
CI=0.36


[22-37]:
1oi7a_PU_22-37
CI=0.67


[38-54]:
1oi7a_PU_38-54
CI=2.63


[55-70]:
1oi7a_PU_55-70
CI=0.11


[71-99]:
1oi7a_PU_71-99
CI=1.93


[100-123]:
1oi7a_PU_100-123
CI=0.47


[124-140]:
1oi7a_PU_124-140
CI=2.38


[141-162]:
1oi7a_PU_141-162
CI=0.85


[163-179]:
1oi7a_PU_163-179
CI=0.32


[180-206]:
1oi7a_PU_180-206
CI=0.41


[207-227]:
1oi7a_PU_207-227
CI=0.17


[228-254]:
1oi7a_PU_228-254
CI=1.61


[255-270 ]:
1oi7a_PU_255-270
CI=0.22